Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L20_leader - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: L20_leader
RFAM: RF00558
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 3 1
Clostridium difficile 630 3 1
Clostridium perfringens ATCC 13124 3 1
Clostridium novyi NT 3 1
Clostridium botulinum A str. ATCC 3502 3 1
Clostridium acetobutylicum ATCC 824 3 1
Clostridium tetani E88 2 1
Clostridium phytofermentans ISDg 3 1
Clostridium cellulolyticum H10 3 1
Clostridium kluyveri DSM 555 2 1
Clostridium sp. OhILAs 3 1
Clostridium bartlettii DSM 16795 3 1
Clostridium bolteae ATCC BAA-613 3 1
Clostridium butyricum 5521
Clostridium hiranonis DSM 13275 3 1
Clostridium leptum DSM 753 3 1
Clostridium nexile DSM 1787 3 1
Clostridium scindens ATCC 35704 3 1
Clostridium sp. L2-50 3 1
Clostridium sp. SS2/1 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
infC
*
Clostridium beijerincki NCIMB 8052

Site:
position = -104
score = 42.82
sequence = ATGTTAAGAAGAAAC...

Gene: Cbei_1569: Translation initiation factor 3
*
Clostridium difficile 630

Site:
position = -163
score = 31.86
sequence = AAACAAAGAAGAAGT...

Gene: CD0685: Translation initiation factor 3
*
Clostridium perfringens ATCC 13124

Site:
position = -150
score = 70.05
sequence = TGATGTCAAGAAGAA...

Gene: CPF_2146: Translation initiation factor 3
*
Clostridium novyi NT

Site:
position = -316
score = 61.85
sequence = TCGTTAAGAAGAAAC...

Gene: NT01CX_1761: Translation initiation factor 3
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -162
score = 54.1
sequence = TTTATGTAAGTAGAA...

Gene: CBO3137: Translation initiation factor 3
*
Clostridium acetobutylicum ATCC 824

Site:
position = -149
score = 57.52
sequence = AGTATTGAAGAAGAA...

Gene: CAC2361: Translation initiation factor 3
*
Clostridium tetani E88

Site:
position = -126
score = 66.37
sequence = AAACGTTAAGAAGAA...

Gene: CTC02285: Translation initiation factor 3
*
Clostridium phytofermentans ISDg

Site:
position = -218
score = 26.51
sequence = ATAGCAAGTAGAGTA...

Gene: null: Translation initiation factor 3
*3
Clostridium cellulolyticum H10

Site:
position = -220
score = 41.65
sequence = AAAACAAGAAGAAGT...

Gene: Ccel_1311: Translation initiation factor 3

Gene: Ccel_2619: Translation initiation factor 3

Gene: Ccel_2666: Translation initiation factor 3
 
Clostridium kluyveri DSM 555

Gene: CKL_1604: Translation initiation factor 3
*
Clostridium sp. OhILAs

Site:
position = -271
score = 35.57
sequence = GTAAACAAAGAAGAA...

Gene: Clos_1978: Translation initiation factor 3
*
Clostridium bartlettii DSM 16795

Site:
position = -249
score = 25.99
sequence = AACAGTAAAGAAGAA...

Gene: CLOBAR_01302: Translation initiation factor 3
*
Clostridium bolteae ATCC BAA-613

Site:
position = -240
score = 16.05
sequence = GACAGGAAAGCAGGT...

Gene: CLOBOL_05438: Translation initiation factor 3
 
Clostridium butyricum 5521
*
Clostridium hiranonis DSM 13275

Site:
position = -246
score = 35.07
sequence = ACAGCAAGTAGAAAT...

Gene: CLOHIR_01892: Translation initiation factor 3
*
Clostridium leptum DSM 753

Site:
position = -79
score = 34.51
sequence = TACAACAAAGCAGAG...

Gene: CLOLEP_03303: Translation initiation factor 3
*
Clostridium nexile DSM 1787

Site:
position = -210
score = 31.1
sequence = AAAAAGAAAGCAGAG...

Gene: CLONEX_02671: Translation initiation factor 3
*
Clostridium scindens ATCC 35704

Site:
position = -171
score = 24.39
sequence = AAACAAAGTAGAGTA...

Gene: CLOSCI_01277: Translation initiation factor 3
*
Clostridium sp. L2-50

Site:
position = -156
score = 50.66
sequence = CAAGAAAGCAGAGTA...

Gene: CLOL250_00814: Translation initiation factor 3
*
Clostridium sp. SS2/1

Site:
position = -92
score = 29.56
sequence = CAACAAAGAAGAGTA...

Gene: CLOSS21_02197: Translation initiation factor 3
Translation initiation factor 3
rpmI
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1570: LSU ribosomal protein L35p
 
Clostridium difficile 630

Gene: CD0686: LSU ribosomal protein L35p
 
Clostridium perfringens ATCC 13124

Gene: CPF_2145: LSU ribosomal protein L35p
 
Clostridium novyi NT

Gene: NT01CX_1762: LSU ribosomal protein L35p
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3136: LSU ribosomal protein L35p
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2360: LSU ribosomal protein L35p
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: LSU ribosomal protein L35p
 
Clostridium cellulolyticum H10

Gene: Ccel_1312: LSU ribosomal protein L35p
*
Clostridium kluyveri DSM 555

Site:
position = -190
score = 58.76
sequence = AAACGTTAAGAAGAA...

Gene: CKL_3195: LSU ribosomal protein L35p
 
Clostridium sp. OhILAs

Gene: Clos_1977: LSU ribosomal protein L35p
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01301: LSU ribosomal protein L35p
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05437: LSU ribosomal protein L35p
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01893: LSU ribosomal protein L35p
 
Clostridium leptum DSM 753

Gene: CLOLEP_03302: LSU ribosomal protein L35p
 
Clostridium nexile DSM 1787

Gene: CLONEX_02670: LSU ribosomal protein L35p
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01278: LSU ribosomal protein L35p
 
Clostridium sp. L2-50

Gene: CLOL250_00815: LSU ribosomal protein L35p
 
Clostridium sp. SS2/1

Gene: CLOSS21_02198: LSU ribosomal protein L35p
LSU ribosomal protein L35p
rplT
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1571: LSU ribosomal protein L20p
 
Clostridium difficile 630

Gene: CD0687: LSU ribosomal protein L20p
 
Clostridium perfringens ATCC 13124

Gene: CPF_2144: LSU ribosomal protein L20p
 
Clostridium novyi NT

Gene: NT01CX_1763: LSU ribosomal protein L20p
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3135: LSU ribosomal protein L20p
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2359: LSU ribosomal protein L20p
 
Clostridium tetani E88

Gene: CTC02283: LSU ribosomal protein L20p
 
Clostridium phytofermentans ISDg

Gene: null: LSU ribosomal protein L20p
 
Clostridium cellulolyticum H10

Gene: Ccel_1313: LSU ribosomal protein L20p
 
Clostridium kluyveri DSM 555

Gene: CKL_3194: LSU ribosomal protein L20p
 
Clostridium sp. OhILAs

Gene: Clos_1976: LSU ribosomal protein L20p
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01300: LSU ribosomal protein L20p
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05436: LSU ribosomal protein L20p
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01894: LSU ribosomal protein L20p
 
Clostridium leptum DSM 753

Gene: CLOLEP_03301: LSU ribosomal protein L20p
 
Clostridium nexile DSM 1787

Gene: CLONEX_02669: LSU ribosomal protein L20p
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01279: LSU ribosomal protein L20p
 
Clostridium sp. L2-50

Gene: CLOL250_00816: LSU ribosomal protein L20p
 
Clostridium sp. SS2/1

Gene: CLOSS21_02199: LSU ribosomal protein L20p
LSU ribosomal protein L20p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD