Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L19_leader - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: L19_leader
RFAM: RF00556
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 1 1
Clostridium difficile 630 1 1
Clostridium perfringens ATCC 13124 1 1
Clostridium novyi NT 1 1
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium tetani E88 1 1
Clostridium phytofermentans ISDg
Clostridium cellulolyticum H10 1 1
Clostridium kluyveri DSM 555 1 1
Clostridium sp. OhILAs 1 1
Clostridium bartlettii DSM 16795 1 1
Clostridium bolteae ATCC BAA-613
Clostridium butyricum 5521 1 1
Clostridium hiranonis DSM 13275
Clostridium leptum DSM 753 1 1
Clostridium nexile DSM 1787 1 1
Clostridium scindens ATCC 35704 1 1
Clostridium sp. L2-50 1 1
Clostridium sp. SS2/1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplS
*
Clostridium beijerincki NCIMB 8052

Site:
position = -64
score = 27.32
sequence = GGGCGTTCCGCTGTC...

Gene: Cbei_1180: LSU ribosomal protein L19p
*
Clostridium difficile 630

Site:
position = -65
score = 22.19
sequence = GGGCGTTCCTCTGTT...

Gene: CD1257: LSU ribosomal protein L19p
*
Clostridium perfringens ATCC 13124

Site:
position = -71
score = 31.71
sequence = ACCGGCGGTCCTCTG...

Gene: CPF_1962: LSU ribosomal protein L19p
*
Clostridium novyi NT

Site:
position = -76
score = 17.44
sequence = ACGGGCGGTCCTCTG...

Gene: NT01CX_2208: LSU ribosomal protein L19p
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -78
score = 21.89
sequence = ACGGGCGGTCCTCTG...

Gene: CBO2444: LSU ribosomal protein L19p
*
Clostridium acetobutylicum ATCC 824

Site:
position = -61
score = 23.42
sequence = AGGCGGTCCTCTGTC...

Gene: CAC1759: LSU ribosomal protein L19p
*
Clostridium tetani E88

Site:
position = -48
score = 21.28
sequence = GGGCGGTCCTCTGTT...

Gene: CTC01252: LSU ribosomal protein L19p
 
Clostridium phytofermentans ISDg

Gene: null: LSU ribosomal protein L19p
*
Clostridium cellulolyticum H10

Site:
position = -58
score = 27.93
sequence = GGATGGTCCTCTGCA...

Gene: Ccel_0714: LSU ribosomal protein L19p
*
Clostridium kluyveri DSM 555

Site:
position = -68
score = 22.06
sequence = GGGCGTTCCTCTGTC...

Gene: CKL_1406: LSU ribosomal protein L19p
*
Clostridium sp. OhILAs

Site:
position = -57
score = 18.6
sequence = GGACGTTCCTCTACA...

Gene: Clos_1468: LSU ribosomal protein L19p
*
Clostridium bartlettii DSM 16795

Site:
position = -63
score = 24.76
sequence = ACGGGCATTCCTCTG...

Gene: CLOBAR_02203: LSU ribosomal protein L19p
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04032: LSU ribosomal protein L19p
*
Clostridium butyricum 5521

Site:
position = -69
score = 24.48
sequence = GGGCGTTCCTCTGTC...

Gene: CBY_0541: LSU ribosomal protein L19p
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01179: LSU ribosomal protein L19p
*
Clostridium leptum DSM 753

Site:
position = -51
score = 20.41
sequence = TGACAGTCCTCTGCT...

Gene: CLOLEP_02366: LSU ribosomal protein L19p
*
Clostridium nexile DSM 1787

Site:
position = -64
score = 27.53
sequence = AGAGATGGTCCTCTG...

Gene: CLONEX_03041: LSU ribosomal protein L19p
*
Clostridium scindens ATCC 35704

Site:
position = -60
score = 19.48
sequence = AGATGGTCCTCTAGT...

Gene: CLOSCI_01325: LSU ribosomal protein L19p
*
Clostridium sp. L2-50

Site:
position = -63
score = 32.36
sequence = ATCGATGGTCCTCTG...

Gene: CLOL250_00256: LSU ribosomal protein L19p
*
Clostridium sp. SS2/1

Site:
position = 2
score = 28.49
sequence = GGATGGTCCTCTGTT...

Gene: CLOSS21_02544: LSU ribosomal protein L19p
LSU ribosomal protein L19p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD