Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L10_leader - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: L10_leader
RFAM: RF00557
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485 2 1
Chloroflexus sp. Y-400-fl 2 1
Roseiflexus castenholzii DSM 13941 2 1
Roseiflexus sp. RS-1 2 1
Herpetosiphon aurantiacus ATCC 23779 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplJ
*
Chloroflexus aggregans DSM 9485

Site:
position = -218
score = 35.82
sequence = TAGTTTAATCTCTTA...

Gene: Cagg_1474: LSU ribosomal protein L10p (P0)
*
Chloroflexus sp. Y-400-fl

Site:
position = -207
score = 34.65
sequence = ATTTGCATCGTTAGC...

Gene: Chy400_2356: LSU ribosomal protein L10p (P0)
*
Roseiflexus castenholzii DSM 13941

Site:
position = -163
score = 33.94
sequence = ACAGGTGAATAGTCG...

Gene: Rcas_4318: LSU ribosomal protein L10p (P0)
*
Roseiflexus sp. RS-1

Site:
position = -159
score = 55.25
sequence = GATATATATGCTAAG...

Gene: RoseRS_3328: LSU ribosomal protein L10p (P0)
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -175
score = 62.6
sequence = CGGTACAAGAAATAC...

Gene: Haur_0140: LSU ribosomal protein L10p (P0)
LSU ribosomal protein L10p (P0)
rplL
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_1473: LSU ribosomal protein L7/L12 (P1/P2)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2357: LSU ribosomal protein L7/L12 (P1/P2)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_4317: LSU ribosomal protein L7/L12 (P1/P2)
 
Roseiflexus sp. RS-1

Gene: RoseRS_3329: LSU ribosomal protein L7/L12 (P1/P2)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_0141: LSU ribosomal protein L7/L12 (P1/P2)
LSU ribosomal protein L7/L12 (P1/P2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD