Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L10_leader - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: L10_leader
RFAM: RF00557
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 2 1
Clostridium difficile 630 2 1
Clostridium perfringens ATCC 13124 2 1
Clostridium novyi NT 2 1
Clostridium botulinum A str. ATCC 3502 2 1
Clostridium acetobutylicum ATCC 824 2 1
Clostridium tetani E88 1 1
Clostridium phytofermentans ISDg 2 1
Clostridium cellulolyticum H10 2 1
Clostridium kluyveri DSM 555 2 1
Clostridium sp. OhILAs 2 1
Clostridium bartlettii DSM 16795 2 1
Clostridium bolteae ATCC BAA-613 2 1
Clostridium butyricum 5521
Clostridium hiranonis DSM 13275 2 1
Clostridium leptum DSM 753 2 1
Clostridium nexile DSM 1787 2 1
Clostridium scindens ATCC 35704 2 1
Clostridium sp. L2-50 2 1
Clostridium sp. SS2/1 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplJ
*
Clostridium beijerincki NCIMB 8052

Site:
position = -158
score = 72.37
sequence = AAAAGAAAATATTTT...

Gene: Cbei_0142: LSU ribosomal protein L10p (P0)
*
Clostridium difficile 630

Site:
position = -170
score = 73.52
sequence = AAAAAAGAATAGATT...

Gene: CD0063: LSU ribosomal protein L10p (P0)
*
Clostridium perfringens ATCC 13124

Site:
position = -162
score = 74.52
sequence = AAAAAGTGAATGAAA...

Gene: CPF_2724: LSU ribosomal protein L10p (P0)
*
Clostridium novyi NT

Site:
position = -149
score = 77.22
sequence = TTAAATAAGATAATA...

Gene: NT01CX_1105: LSU ribosomal protein L10p (P0)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -161
score = 59.2
sequence = TGTAAAAATGAATAT...

Gene: CBO3490: LSU ribosomal protein L10p (P0)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -168
score = 59.8
sequence = TATTAAATATGTAAA...

Gene: CAC3146: LSU ribosomal protein L10p (P0)
*
Clostridium tetani E88

Site:
position = -172
score = 70.45
sequence = TAGAATTAAAGAAAA...

Gene: CTC02610: LSU ribosomal protein L10p (P0)
*
Clostridium phytofermentans ISDg

Site:
position = -180
score = 84.54
sequence = GCTTAATTCTCACAA...

Gene: null: LSU ribosomal protein L10p (P0)
*
Clostridium cellulolyticum H10

Site:
position = -193
score = 50.98
sequence = GGAAATTGAATATTG...

Gene: Ccel_0310: LSU ribosomal protein L10p (P0)
*
Clostridium kluyveri DSM 555

Site:
position = -128
score = 55.82
sequence = TTGAATAAGTATATT...

Gene: CKL_0214: LSU ribosomal protein L10p (P0)
*
Clostridium sp. OhILAs

Site:
position = -183
score = 50.12
sequence = TAAAAATGAATATTT...

Gene: Clos_0482: LSU ribosomal protein L10p (P0)
*
Clostridium bartlettii DSM 16795

Site:
position = -161
score = 75.09
sequence = AAAAACGAATAGATT...

Gene: CLOBAR_00085: LSU ribosomal protein L10p (P0)
*
Clostridium bolteae ATCC BAA-613

Site:
position = -334
score = 66.15
sequence = ATACCACAGTATTGA...

Gene: CLOBOL_06829: LSU ribosomal protein L10p (P0)
 
Clostridium butyricum 5521
*
Clostridium hiranonis DSM 13275

Site:
position = -169
score = 80.88
sequence = AAAAAAGAATAGATT...

Gene: CLOHIR_01568: LSU ribosomal protein L10p (P0)
*
Clostridium leptum DSM 753

Site:
position = -129
score = 64.85
sequence = ATATTTGCTGATCTT...

Gene: CLOLEP_02935: LSU ribosomal protein L10p (P0)
*
Clostridium nexile DSM 1787

Site:
position = -183
score = 81.11
sequence = AACTTATATTAGAAA...

Gene: CLONEX_01917: LSU ribosomal protein L10p (P0)
*
Clostridium scindens ATCC 35704

Site:
position = -189
score = 73.24
sequence = TAATATTTCACGATG...

Gene: CLOSCI_00863: LSU ribosomal protein L10p (P0)
*
Clostridium sp. L2-50

Site:
position = -192
score = 84.99
sequence = TATCCCCCGATGAAC...

Gene: CLOL250_01641: LSU ribosomal protein L10p (P0)
*
Clostridium sp. SS2/1

Site:
position = -175
score = 79.53
sequence = TATGTAAAGTATTAC...

Gene: CLOSS21_02766: LSU ribosomal protein L10p (P0)
LSU ribosomal protein L10p (P0)
rplL
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0143: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium difficile 630

Gene: CD0064: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2723: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium novyi NT

Gene: NT01CX_1106: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3489: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3145: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium cellulolyticum H10

Gene: Ccel_0311: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium kluyveri DSM 555

Gene: CKL_0215: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium sp. OhILAs

Gene: Clos_0483: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00086: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_06828: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01569: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium leptum DSM 753

Gene: CLOLEP_02936: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium nexile DSM 1787

Gene: CLONEX_01916: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00862: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium sp. L2-50

Gene: CLOL250_01642: LSU ribosomal protein L7/L12 (P1/P2)
 
Clostridium sp. SS2/1

Gene: CLOSS21_02767: LSU ribosomal protein L7/L12 (P1/P2)
LSU ribosomal protein L7/L12 (P1/P2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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