Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485
Chloroflexus sp. Y-400-fl
Roseiflexus castenholzii DSM 13941 5 1
Roseiflexus sp. RS-1 5 1
Herpetosiphon aurantiacus ATCC 23779 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gcvT
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_0253: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_3767: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Roseiflexus castenholzii DSM 13941

Site:
position = -137
score = 43.97
sequence = CCGACGACCCTCTGG...

Site:
position = -235
score = 50.09
sequence = GATGACGGGCGTGGG...

Gene: Rcas_2285: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Roseiflexus sp. RS-1

Site:
position = -236
score = 52.51
sequence = GACGACGGGCGTGGG...

Site:
position = -138
score = 53.28
sequence = CTGACGACCCTCTGG...

Gene: RoseRS_1526: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2868: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_0252: Glycine cleavage system H protein
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_3768: Glycine cleavage system H protein
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2284: Glycine cleavage system H protein
 
Roseiflexus sp. RS-1

Gene: RoseRS_1525: Glycine cleavage system H protein
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2869: Glycine cleavage system H protein
Glycine cleavage system H protein
gcvP1
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_0251: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_3769: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2283: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Roseiflexus sp. RS-1

Gene: RoseRS_1524: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2870: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
PF01636
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_0250: aminoglycoside phosphotransferase
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_3770: aminoglycoside phosphotransferase
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2282: aminoglycoside phosphotransferase
 
Roseiflexus sp. RS-1

Gene: RoseRS_1523: aminoglycoside phosphotransferase
 
Herpetosiphon aurantiacus ATCC 23779
aminoglycoside phosphotransferase
gcvP2
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_0249: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_3771: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2281: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Roseiflexus sp. RS-1

Gene: RoseRS_1522: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2871: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
lplA
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -134
score = 59.38
sequence = GACAGCGCTCTGGAG...

Site:
position = -233
score = 48.92
sequence = TGAAGGACGCGGAAG...

Gene: Haur_2867: Lipoate-protein ligase A
Lipoate-protein ligase A
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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