Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 2 2
Clostridium difficile 630 8 3
Clostridium perfringens ATCC 13124 1 1
Clostridium novyi NT 1 1
Clostridium botulinum A str. ATCC 3502 8 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium tetani E88 2 2
Clostridium phytofermentans ISDg
Clostridium cellulolyticum H10 2 1
Clostridium kluyveri DSM 555 7 3
Clostridium sp. OhILAs 12 2
Clostridium bartlettii DSM 16795 2 2
Clostridium bolteae ATCC BAA-613 10 3
Clostridium butyricum 5521 1 1
Clostridium hiranonis DSM 13275 12 3
Clostridium leptum DSM 753 1 1
Clostridium nexile DSM 1787 1 1
Clostridium scindens ATCC 35704 11 2
Clostridium sp. L2-50
Clostridium sp. SS2/1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glyP
 
Clostridium beijerincki NCIMB 8052
*
Clostridium difficile 630

Site:
position = -277
score = 65.62
sequence = TACGGAACTCTGGAG...

Site:
position = -358
score = 34.92
sequence = AAGATTTTATAGAAG...

Gene: CD2276: Sodium/glycine symporter GlyP
*
Clostridium perfringens ATCC 13124

Site:
position = -168
score = 72.69
sequence = TGGACGAGCCTCTGG...

Site:
position = -242
score = 48.54
sequence = GATGAAGGTAATGGG...

Gene: CPF_1672: Sodium/glycine symporter GlyP
*
Clostridium novyi NT

Site:
position = -261
score = 32.82
sequence = GATGAAGATAGCGGG...

Site:
position = -174
score = 66.31
sequence = TGGACGAGCCTCTGG...

Gene: NT01CX_2425: Sodium/glycine symporter GlyP
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
*
Clostridium tetani E88

Site:
position = -100
score = 72.39
sequence = TGGACGAAACTCTGG...

Site:
position = -186
score = 35.32
sequence = GATGAAGGTAATAGG...

Gene: CTC01975: Sodium/glycine symporter GlyP
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
*
Clostridium bartlettii DSM 16795

Site:
position = -264
score = 67.56
sequence = TAGGATACTCTGGAG...

Site:
position = -349
score = 38.76
sequence = GAAACTTTACAGAAG...

Gene: CLOBAR_02646: Sodium/glycine symporter GlyP
 
Clostridium bolteae ATCC BAA-613
*
Clostridium butyricum 5521

Site:
position = -425
score = 46.55
sequence = GATGAAGATGGTGGG...

Site:
position = -327
score = 56.78
sequence = GCCTCTGGAGAGACT...

Gene: CBY_0150: Sodium/glycine symporter GlyP
 
Clostridium hiranonis DSM 13275
*
Clostridium leptum DSM 753

Site:
position = -122
score = 58.65
sequence = GGCGACTCTCTGGAG...

Gene: CLOLEP_01924: Sodium/glycine symporter GlyP
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
*
Clostridium sp. SS2/1

Site:
position = -216
score = 61.45
sequence = AGAAATGAACTCTGG...

Gene: CLOSS21_00738: Sodium/glycine symporter GlyP
Sodium/glycine symporter GlyP
 
CRON 2.
potE
 
Clostridium beijerincki NCIMB 8052
 2
Clostridium difficile 630

Gene: CD2465: Amino acid permease family protein

Gene: CD1555: Amino acid permease family protein
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
*3
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00193: Amino acid permease family protein

Gene: CLOBAR_02017: Amino acid permease family protein

Site:
position = -266
score = 47.09
sequence = TGAAATTTATGGGAG...

Gene: CLOBAR_00195: Amino acid permease family protein
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
*
Clostridium scindens ATCC 35704

Site:
position = -198
score = 30.19
sequence = GAAGTAGCGAGGAAG...

Site:
position = -91
score = 48.45
sequence = GATGGGACTCTGGAA...

Gene: CLOSCI_00442: Amino acid permease family protein
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Amino acid permease family protein
 
CRON 3.
pfoR
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0612: Perfringolysin O regulator protein PfoR
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -386
score = 49.23
sequence = CGGACGGGACTCTGG...

Site:
position = -463
score = 49.83
sequence = GTTGATGAATTCGGG...

Gene: CLOBOL_00277: Perfringolysin O regulator protein PfoR
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00466: Perfringolysin O regulator protein PfoR
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00036: Perfringolysin O regulator protein PfoR
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Perfringolysin O regulator protein PfoR
 
CRON 4.
COG0697
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124

Gene: CPF_0320: Permease of the drug/metabolite transporter (DMT) superfamily
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1334: Permease of the drug/metabolite transporter (DMT) superfamily
 
Clostridium acetobutylicum ATCC 824
*2
Clostridium tetani E88

Site:
position = -252
score = 57.3
sequence = TGAAGAGTATAAGAG...

Gene: CTC01813: Permease of the drug/metabolite transporter (DMT) superfamily

Gene: CTC01502: Permease of the drug/metabolite transporter (DMT) superfamily
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01070: Permease of the drug/metabolite transporter (DMT) superfamily
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Permease of the drug/metabolite transporter (DMT) superfamily
 
CRON 5.
glyA2
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -349
score = 47.83
sequence = TGATGGATTCGGGAG...

Site:
position = -272
score = 34.04
sequence = GACGAAACTCTGGAA...

Gene: CLOBOL_05294: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Serine hydroxymethyltransferase (EC 2.1.2.1)
gcvT
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0696: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Clostridium cellulolyticum H10
*
Clostridium kluyveri DSM 555

Site:
position = -128
score = 34.1
sequence = TTGACGAAACTCTGG...

Site:
position = -213
score = 55.8
sequence = AATGATAAATTTAGG...

Gene: CKL_1774: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Clostridium sp. OhILAs

Site:
position = -468
score = 49.38
sequence = TGAAAATAACGAGAG...

Site:
position = -370
score = 57.87
sequence = GATGAATCTCTGGAG...

Gene: Clos_0065: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Clostridium bartlettii DSM 16795
*2
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05295: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)

Site:
position = -125
score = 39.84
sequence = CGGACGATACTCTGG...

Site:
position = -265
score = 39.65
sequence = GAAGATGGATTCGGG...

Gene: CLOBOL_01537: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0697: Glycine cleavage system H protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Glycine cleavage system H protein
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555

Gene: CKL_1773: Glycine cleavage system H protein
 
Clostridium sp. OhILAs

Gene: Clos_0066: Glycine cleavage system H protein
 
Clostridium bartlettii DSM 16795
 2
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05296: Glycine cleavage system H protein

Gene: CLOBOL_01536: Glycine cleavage system H protein
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Glycine cleavage system H protein
gcvP1
 
Clostridium beijerincki NCIMB 8052
*
Clostridium difficile 630

Site:
position = -213
score = 41.99
sequence = GATGGGACTCTGGAG...

Site:
position = -313
score = 53.0
sequence = TGAGATTAGCGAGAG...

Gene: CD1657: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) / Glycine cleavage system H protein / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0698: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555

Gene: CKL_1772: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Clostridium sp. OhILAs

Gene: Clos_0067: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Clostridium bartlettii DSM 16795
 3
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05297: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)

Gene: CLOBOL_06282: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)

Gene: CLOBOL_01535: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
gcvP2
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD1658: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0699: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555

Gene: CKL_1771: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Clostridium sp. OhILAs

Gene: Clos_0068: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Clostridium bartlettii DSM 16795
 3
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05298: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)

Gene: CLOBOL_06283: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)

Gene: CLOBOL_01534: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 
CRON 6.
grdX
 
Clostridium beijerincki NCIMB 8052
*
Clostridium difficile 630

Site:
position = -215
score = 47.13
sequence = GATGAAGAGTATGGG...

Gene: CD2357: putative glycine reductase complex component
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -159
score = 38.94
sequence = GACAAAACTCTGGAA...

Site:
position = -239
score = 20.82
sequence = TATCCTTATAGGATA...

Gene: CBO1255: putative glycine reductase complex component
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
*
Clostridium sp. OhILAs

Site:
position = -194
score = 40.5
sequence = GACGGTACTCTGAAA...

Site:
position = -298
score = 52.62
sequence = AGAAGAGTGCGGGAG...

Gene: Clos_0953: putative glycine reductase complex component
 
Clostridium bartlettii DSM 16795
 2
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01011: putative glycine reductase complex component

Gene: CLOBOL_01874: putative glycine reductase complex component
 
Clostridium butyricum 5521
*
Clostridium hiranonis DSM 13275

Site:
position = -185
score = 33.99
sequence = TGAAGCGTATAGGAG...

Gene: CLOHIR_00161: putative glycine reductase complex component
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
*
Clostridium scindens ATCC 35704

Site:
position = -205
score = 58.51
sequence = ATGATGTTTCTCAAG...

Gene: CLOSCI_00776: putative glycine reductase complex component
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
putative glycine reductase complex component
grdE
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD2354: Glycine reductase component B (EC 1.21.4.2)
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1256: Glycine reductase component B (EC 1.21.4.2)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0956: Glycine reductase component B (EC 1.21.4.2)
 
Clostridium bartlettii DSM 16795
 2
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01012: Glycine reductase component B (EC 1.21.4.2)

Gene: CLOBOL_01873: Glycine reductase component B (EC 1.21.4.2)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00164: Glycine reductase component B (EC 1.21.4.2)
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00775: Glycine reductase component B (EC 1.21.4.2)
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Glycine reductase component B (EC 1.21.4.2)
grdB
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD2351: Glycine reductase complex component B gamma subunit
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1257: Glycine reductase complex component B gamma subunit
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0958: Glycine reductase complex component B gamma subunit
 
Clostridium bartlettii DSM 16795
 4
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01871: Glycine reductase complex component B gamma subunit

Gene: CLOBOL_01872: Glycine reductase complex component B gamma subunit

Gene: CLOBOL_01014: Glycine reductase complex component B gamma subunit

Gene: CLOBOL_01013: Glycine reductase complex component B gamma subunit
 
Clostridium butyricum 5521
 2
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00167: Glycine reductase complex component B gamma subunit

Gene: CLOHIR_00168: Glycine reductase complex component B gamma subunit
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_00774: Glycine reductase complex component B gamma subunit

Gene: CLOSCI_00773: Glycine reductase complex component B gamma subunit
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Glycine reductase complex component B gamma subunit
trxB
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD2356: Thioredoxin reductase (EC 1.8.1.9)
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1259: Thioredoxin reductase (EC 1.8.1.9)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0954: Thioredoxin reductase (EC 1.8.1.9)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02651: Thioredoxin reductase (EC 1.8.1.9)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01870: Thioredoxin reductase (EC 1.8.1.9)
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00162: Thioredoxin reductase (EC 1.8.1.9)
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00772: Thioredoxin reductase (EC 1.8.1.9)
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Thioredoxin reductase (EC 1.8.1.9)
trxA
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD2355: Thioredoxin
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1260: Thioredoxin
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0955: Thioredoxin
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02650: Thioredoxin
 2
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01869: Thioredoxin

Gene: CLOBOL_03144: Thioredoxin
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00163: Thioredoxin
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00771: Thioredoxin
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Thioredoxin
grdA
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD2352: Glycine reductase complex protein A
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1261: Glycine reductase complex protein A
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0957: Glycine reductase complex protein A
 
Clostridium bartlettii DSM 16795
 4
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01867: Glycine reductase complex protein A

Gene: CLOBOL_01868: Glycine reductase complex protein A

Gene: CLOBOL_03143: Glycine reductase complex protein A

Gene: CLOBOL_03142: Glycine reductase complex protein A
 
Clostridium butyricum 5521
 2
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00165: Glycine reductase complex protein A

Gene: CLOHIR_00166: Glycine reductase complex protein A
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 2
Clostridium scindens ATCC 35704

Gene: CLOSCI_00770: Glycine reductase complex protein A

Gene: CLOSCI_00769: Glycine reductase complex protein A
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Glycine reductase complex protein A
grdC
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD2349: Glycine reductase component C chain 1
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1263: Glycine reductase component C chain 1
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0959: Glycine reductase component C chain 1
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01866: Glycine reductase component C chain 1
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00169: Glycine reductase component C chain 1
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00768: Glycine reductase component C chain 1
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Glycine reductase component C chain 1
grdD
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD2348: Glycine reductase component C chain 2
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1264: Glycine reductase component C chain 2
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs

Gene: Clos_0960: Glycine reductase component C chain 2
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01865: Glycine reductase component C chain 2
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00170: Glycine reductase component C chain 2
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00767: Glycine reductase component C chain 2
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Glycine reductase component C chain 2
 
CRON 7.
serC
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630

Gene: CD0994: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium perfringens ATCC 13124

Gene: CPF_0060: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium novyi NT

Gene: NT01CX_0729: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1126: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0014: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium tetani E88

Gene: CTC00695: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium phytofermentans ISDg
*
Clostridium cellulolyticum H10

Site:
position = -323
score = 45.46
sequence = TGATTGTTGTGGGAG...

Site:
position = -244
score = 58.85
sequence = GACGGACCTCTGGAG...

Gene: Ccel_1188: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium kluyveri DSM 555

Gene: CKL_3817: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01071: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3790: Serine--pyruvate aminotransferase (EC 2.6.1.-)
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Serine--pyruvate aminotransferase (EC 2.6.1.-)
serA
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4927: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium difficile 630

Gene: CD0995: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium perfringens ATCC 13124

Gene: CPF_0061: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium novyi NT

Gene: NT01CX_0728: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1127: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0015: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium tetani E88

Gene: CTC00694: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10

Gene: Ccel_1189: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium kluyveri DSM 555

Gene: CKL_3816: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01070: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3791: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
CRON 8.
gcvR
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_2351: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium difficile 630

Gene: CD2627: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium perfringens ATCC 13124

Gene: CPF_1747: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium novyi NT

Gene: NT01CX_0174: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0478: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium cellulolyticum H10

Gene: Ccel_1723: ACT domain containing transcriptional regulators, related to gcvR of E.coli
*
Clostridium kluyveri DSM 555

Site:
position = -229
score = 61.37
sequence = TGGACGAACCTCTGG...

Gene: CKL_0776: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02783: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02936: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium butyricum 5521

Gene: CBY_3159: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787

Gene: CLONEX_01555: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50

Gene: CLOL250_00210: ACT domain containing transcriptional regulators, related to gcvR of E.coli
 
Clostridium sp. SS2/1

Gene: CLOSS21_02622: ACT domain containing transcriptional regulators, related to gcvR of E.coli
ACT domain containing transcriptional regulators, related to gcvR of E.coli
COG2848
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_2352: hypothetical protein
 
Clostridium difficile 630

Gene: CD2626: hypothetical protein
 
Clostridium perfringens ATCC 13124

Gene: CPF_1748: hypothetical protein
 
Clostridium novyi NT

Gene: NT01CX_0175: hypothetical protein
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0479: hypothetical protein
 
Clostridium tetani E88

Gene: CTC01034: hypothetical protein
 
Clostridium phytofermentans ISDg

Gene: null: hypothetical protein
 
Clostridium cellulolyticum H10

Gene: Ccel_1722: hypothetical protein
 
Clostridium kluyveri DSM 555

Gene: CKL_0775: hypothetical protein
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02782: hypothetical protein
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02935: hypothetical protein
 
Clostridium butyricum 5521

Gene: CBY_3160: hypothetical protein
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_03314: hypothetical protein
 
Clostridium nexile DSM 1787

Gene: CLONEX_01556: hypothetical protein
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00641: hypothetical protein
 
Clostridium sp. L2-50

Gene: CLOL250_00209: hypothetical protein
 
Clostridium sp. SS2/1

Gene: CLOSS21_02623: hypothetical protein
hypothetical protein
 
CRON 9.
alsT
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_06470: Na+/alanine symporter
 
Clostridium butyricum 5521
*
Clostridium hiranonis DSM 13275

Site:
position = -204
score = 63.37
sequence = TTAGGAACTCTGGAG...

Gene: CLOHIR_02272: Na+/alanine symporter
 
Clostridium leptum DSM 753
*
Clostridium nexile DSM 1787

Site:
position = -187
score = 51.25
sequence = TTAAAAAAACTCTGG...

Gene: CLONEX_04109: Na+/alanine symporter
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Na+/alanine symporter
 
CRON 10.
COG2860
*
Clostridium beijerincki NCIMB 8052

Site:
position = -155
score = 39.1
sequence = CTGACGAAACTCTGG...

Site:
position = -237
score = 48.39
sequence = TGTGACGAATTTGGG...

Gene: Cbei_2529: membrane protein of unknown function UPF0126
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10

Gene: Ccel_3364: membrane protein of unknown function UPF0126
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
membrane protein of unknown function UPF0126
 
CRON 11.
COG1748
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4409: Carboxynorspermidine dehydrogenase family, COG1748
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Carboxynorspermidine dehydrogenase family, COG1748
 
Clostridium cellulolyticum H10

Gene: Ccel_1128: Carboxynorspermidine dehydrogenase family, COG1748
 
Clostridium kluyveri DSM 555
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_4120: Carboxynorspermidine dehydrogenase family, COG1748
*
Clostridium hiranonis DSM 13275

Site:
position = -318
score = 31.41
sequence = TGAGGACTGCATTAG...

Site:
position = -217
score = 27.54
sequence = GACGATACTTTGGAG...

Gene: CLOHIR_00302: Carboxynorspermidine dehydrogenase family, COG1748
 
Clostridium leptum DSM 753

Gene: CLOLEP_01502: Carboxynorspermidine dehydrogenase family, COG1748
 2
Clostridium nexile DSM 1787

Gene: CLONEX_02167: Carboxynorspermidine dehydrogenase family, COG1748

Gene: CLONEX_02165: Carboxynorspermidine dehydrogenase family, COG1748
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
Carboxynorspermidine dehydrogenase family, COG1748
 
CRON 12.
aroP
*
Clostridium beijerincki NCIMB 8052

Site:
position = -220
score = 52.62
sequence = ACCTTGGAGAGACTC...

Site:
position = -316
score = 47.22
sequence = GATGAAGATAGCGGG...

Gene: Cbei_3972: D-serine/D-alanine/glycine transporter
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium acetobutylicum ATCC 824

Site:
position = -222
score = 53.73
sequence = ACCCTTGGAGAGACT...

Site:
position = -317
score = 40.71
sequence = GATGAAGTTAGCGGG...

Gene: CAC1472: D-serine/D-alanine/glycine transporter
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
*
Clostridium kluyveri DSM 555

Site:
position = -373
score = 51.76
sequence = ATCCTTGGAGAGACT...

Site:
position = -469
score = 38.66
sequence = GATGAAAATAGTGGG...

Gene: CKL_3526: D-serine/D-alanine/glycine transporter
 
Clostridium sp. OhILAs
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
D-serine/D-alanine/glycine transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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