Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GEMM_RNA_motif - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: GEMM_RNA_motif
RFAM: RF01051
Regulation mode:
Biological process: Second messenger response
Effector: Cyclic diguanylate
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052 7 4
Clostridium bartlettii DSM 16795
Clostridium bolteae ATCC BAA-613 4 4
Clostridium butyricum 5521 4 2
Clostridium hiranonis DSM 13275
Clostridium leptum DSM 753
Clostridium nexile DSM 1787 1 1
Clostridium scindens ATCC 35704
Clostridium sp. L2-50
Clostridium sp. OhILAs 1 1
Clostridium kluyveri DSM 555 4 2
Clostridium difficile 630 33 6
Clostridium perfringens ATCC 13124 2 2
Clostridium novyi NT 1 1
Clostridium botulinum A str. ATCC 3502
Clostridium acetobutylicum ATCC 824
Clostridium tetani E88 1 1
Clostridium phytofermentans ISDg 2 2
Clostridium cellulolyticum H10
Clostridium sp. SS2/1 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
CD2797
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01122: hypothetical protein
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00533: hypothetical protein
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
*
Clostridium difficile 630

Site:
position = -210
score = 64.22
sequence = GAAAATTAAATGGCA...

Gene: CD2797: hypothetical protein
*2
Clostridium perfringens ATCC 13124

Site:
position = -282
score = 70.73
sequence = TAATATATTGGCAAA...

Gene: CPF_1073: hypothetical protein

Site:
position = -227
score = 67.96
sequence = TTAAAAAAATGGGCA...

Gene: CPF_1489: hypothetical protein
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 2.
CLOSS21_00843
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
*
Clostridium sp. SS2/1

Site:
position = -474
score = 75.87
sequence = TTTATTCATAGGGCA...

Gene: CLOSS21_00843: hypothetical protein
hypothetical protein
 
CRON 3.
CLONEX_03566
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
*
Clostridium nexile DSM 1787

Site:
position = -402
score = 25.09
sequence = ATAATCGCAAAGACA...

Gene: CLONEX_03566: hypothetical protein
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 4.
Clos_1635
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
*
Clostridium sp. OhILAs

Site:
position = -243
score = 40.02
sequence = TACAATAAATGGGCA...

Gene: Clos_1635: Type IV pilin PilA
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Type IV pilin PilA
 
CRON 5.
CLOBAR_02389
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02389: hypothetical protein
*
Clostridium bolteae ATCC BAA-613

Site:
position = -138
score = 50.34
sequence = GTAAATATTGGGGCA...

Gene: CLOBOL_00697: hypothetical protein
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 6.
NT01CX_2393
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -376
score = 34.54
sequence = TATATTCAGGTAGCA...

Gene: CLOBOL_04793: hypothetical protein
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88

Gene: CTC00704: hypothetical protein
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 7.
CLOBOL_02085
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02085: hypothetical protein
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
*
Clostridium sp. SS2/1

Site:
position = -173
score = 56.27
sequence = AAGATTCTAGGCAAA...

Gene: CLOSS21_02742: hypothetical protein
hypothetical protein
 
CRON 8.
Cbei_3975
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_3975: transglutaminase-like predicted protease
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
*
Clostridium tetani E88

Site:
position = -87
score = 58.26
sequence = CACGATAAAGGCAAA...

Gene: CTC00472: transglutaminase-like predicted protease
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
transglutaminase-like predicted protease
 
CRON 9.
CD1990
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
*
Clostridium difficile 630

Site:
position = -177
score = 58.93
sequence = ATTCAGATATAGGCA...

Gene: CD1990: hypothetical protein
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 10.
CLOBOL_02760
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02760: transglutaminase domain protein
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753

Gene: CLOLEP_00425: transglutaminase domain protein
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_02626: transglutaminase domain protein
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
*
Clostridium phytofermentans ISDg

Site:
position = -99
score = 62.81
sequence = AACGATAATAGCAAA...

Gene: null: transglutaminase domain protein
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1

Gene: CLOSS21_00656: transglutaminase domain protein
transglutaminase domain protein
 
CRON 11.
Cbei_0874
*
Clostridium beijerincki NCIMB 8052

Site:
position = -433
score = 65.15
sequence = ATATCAATAGGCACA...

Gene: Cbei_0874: Acetyltransferase-like
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_2077: Acetyltransferase-like
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT

Gene: NT01CX_0958: Acetyltransferase-like
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Acetyltransferase-like
tlpA
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0875: Methyl-accepting chemotaxis protein
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_0906: Methyl-accepting chemotaxis protein
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2468: Methyl-accepting chemotaxis protein
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Methyl-accepting chemotaxis protein
 
CRON 12.
CD2309
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
*2
Clostridium difficile 630

Site:
position = -151
score = 60.68
sequence = AAAACTAAATCGGCA...

Gene: CD1424: hypothetical protein

Site:
position = -142
score = 66.57
sequence = AACTAAATCGGCAAA...

Gene: CD2309: hypothetical protein
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 13.
Cphy_1136
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
*
Clostridium phytofermentans ISDg

Site:
position = -229
score = 67.31
sequence = TATAAATTTAGCAAA...

Gene: null: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
 
CRON 14.
NT01CX_0209
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
*
Clostridium novyi NT

Site:
position = -142
score = 67.48
sequence = CCAACGATAAAGGCA...

Gene: NT01CX_0209: hypothetical protein
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 15.
motA
*3
Clostridium beijerincki NCIMB 8052

Site:
position = -260
score = 68.56
sequence = TAAATGTTACTAGCA...

Gene: Cbei_4273: Flagellar motor rotation protein MotA

Gene: Cbei_4831: Flagellar motor rotation protein MotA

Gene: Cbei_1594: Flagellar motor rotation protein MotA
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_0364: Flagellar motor rotation protein MotA
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_3789: Flagellar motor rotation protein MotA
 
Clostridium difficile 630

Gene: CD0744: Flagellar motor rotation protein MotA
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2227: Flagellar motor rotation protein MotA
 2
Clostridium acetobutylicum ATCC 824

Gene: CAC1846: Flagellar motor rotation protein MotA

Gene: CAC0304: Flagellar motor rotation protein MotA
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10

Gene: Ccel_0264: Flagellar motor rotation protein MotA
 
Clostridium sp. SS2/1
Flagellar motor rotation protein MotA
motB
 3
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4272: Flagellar motor rotation protein MotB

Gene: Cbei_4830: Flagellar motor rotation protein MotB

Gene: Cbei_1593: Flagellar motor rotation protein MotB
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_0365: Flagellar motor rotation protein MotB
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_3788: Flagellar motor rotation protein MotB
 
Clostridium difficile 630

Gene: CD0745: Flagellar motor rotation protein MotB
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2226: Flagellar motor rotation protein MotB
 2
Clostridium acetobutylicum ATCC 824

Gene: CAC1845: Flagellar motor rotation protein MotB

Gene: CAC0305: Flagellar motor rotation protein MotB
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10

Gene: Ccel_0263: Flagellar motor rotation protein MotB
 
Clostridium sp. SS2/1
Flagellar motor rotation protein MotB
 
CRON 16.
CD2830
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
*
Clostridium difficile 630

Site:
position = -186
score = 68.73
sequence = AAATTAAATGAGGCA...

Gene: CD2830: hypothetical protein
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 17.
CLOBOL_00226
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -182
score = 53.65
sequence = AAAAAATAATTAGCA...

Gene: CLOBOL_00226: hypothetical protein
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
CLOBOL_00225
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
*
Clostridium bolteae ATCC BAA-613

Site:
position = -394
score = 53.65
sequence = AAAAAATAATTAGCA...

Gene: CLOBOL_00225: hypothetical protein
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
 
CRON 18.
CLOSS21_01726
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
*
Clostridium sp. SS2/1

Site:
position = -331
score = 70.48
sequence = ATTATTTTAAAGGCA...

Gene: CLOSS21_01726: hypothetical protein
hypothetical protein
 
CRON 19.
cheY
*
Clostridium beijerincki NCIMB 8052

Site:
position = -120
score = 62.23
sequence = TATTGAATTGGCAAA...

Gene: Cbei_0537: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
*
Clostridium butyricum 5521

Site:
position = -148
score = 56.0
sequence = TTCATATTGGGCAAA...

Gene: CBY_0554: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
 
CRON 20.
flgB
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4271: Flagellar basal-body rod protein FlgB
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
*
Clostridium butyricum 5521

Site:
position = -402
score = 60.08
sequence = ATAATTGAATACGCA...

Gene: CBY_3585: Flagellar basal-body rod protein FlgB
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1476: Flagellar basal-body rod protein FlgB
 
Clostridium kluyveri DSM 555

Gene: CKL_1150: Flagellar basal-body rod protein FlgB
*
Clostridium difficile 630

Site:
position = -494
score = 69.29
sequence = AACTAAATAGGCAAA...

Gene: CD0245: Flagellar basal-body rod protein FlgB
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2665: Flagellar basal-body rod protein FlgB
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2165: Flagellar basal-body rod protein FlgB
 
Clostridium tetani E88

Gene: CTC01678: Flagellar basal-body rod protein FlgB
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar basal-body rod protein FlgB
 
Clostridium cellulolyticum H10

Gene: Ccel_2054: Flagellar basal-body rod protein FlgB
 
Clostridium sp. SS2/1
Flagellar basal-body rod protein FlgB
flgC
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4270: Flagellar basal-body rod protein FlgC
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3584: Flagellar basal-body rod protein FlgC
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1477: Flagellar basal-body rod protein FlgC
 
Clostridium kluyveri DSM 555

Gene: CKL_1151: Flagellar basal-body rod protein FlgC
 
Clostridium difficile 630

Gene: CD0246: Flagellar basal-body rod protein FlgC
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2664: Flagellar basal-body rod protein FlgC
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2164: Flagellar basal-body rod protein FlgC
 
Clostridium tetani E88

Gene: CTC01677: Flagellar basal-body rod protein FlgC
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar basal-body rod protein FlgC
 
Clostridium cellulolyticum H10

Gene: Ccel_2053: Flagellar basal-body rod protein FlgC
 
Clostridium sp. SS2/1
Flagellar basal-body rod protein FlgC
fliE
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4269: Flagellar hook-basal body complex protein FliE
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04559: Flagellar hook-basal body complex protein FliE
 
Clostridium butyricum 5521

Gene: CBY_3583: Flagellar hook-basal body complex protein FliE
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1478: Flagellar hook-basal body complex protein FliE
 
Clostridium kluyveri DSM 555

Gene: CKL_1152: Flagellar hook-basal body complex protein FliE
 
Clostridium difficile 630

Gene: CD0247: Flagellar hook-basal body complex protein FliE
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2663: Flagellar hook-basal body complex protein FliE
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2163: Flagellar hook-basal body complex protein FliE
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar hook-basal body complex protein FliE
 
Clostridium cellulolyticum H10

Gene: Ccel_2052: Flagellar hook-basal body complex protein FliE
 
Clostridium sp. SS2/1
Flagellar hook-basal body complex protein FliE
fliF
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4268: Flagellar M-ring protein FliF
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04558: Flagellar M-ring protein FliF
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1479: Flagellar M-ring protein FliF
 
Clostridium kluyveri DSM 555

Gene: CKL_1153: Flagellar M-ring protein FliF
 
Clostridium difficile 630

Gene: CD0248: Flagellar M-ring protein FliF
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2662: Flagellar M-ring protein FliF
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2162: Flagellar M-ring protein FliF
 
Clostridium tetani E88

Gene: CTC01676: Flagellar M-ring protein FliF
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar M-ring protein FliF
 
Clostridium cellulolyticum H10

Gene: Ccel_2051: Flagellar M-ring protein FliF
 
Clostridium sp. SS2/1
Flagellar M-ring protein FliF
fliG
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4267: Flagellar motor switch protein FliG
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04557: Flagellar motor switch protein FliG
 
Clostridium butyricum 5521

Gene: CBY_3580: Flagellar motor switch protein FliG
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1480: Flagellar motor switch protein FliG
 
Clostridium kluyveri DSM 555

Gene: CKL_1154: Flagellar motor switch protein FliG
 
Clostridium difficile 630

Gene: CD0249: Flagellar motor switch protein FliG
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2661: Flagellar motor switch protein FliG
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2161: Flagellar motor switch protein FliG
 
Clostridium tetani E88

Gene: CTC01675: Flagellar motor switch protein FliG
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar motor switch protein FliG
 
Clostridium cellulolyticum H10

Gene: Ccel_2050: Flagellar motor switch protein FliG
 
Clostridium sp. SS2/1
Flagellar motor switch protein FliG
fliH
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4266: Flagellar assembly protein FliH
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04556: Flagellar assembly protein FliH
 
Clostridium butyricum 5521

Gene: CBY_3579: Flagellar assembly protein FliH
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1481: Flagellar assembly protein FliH
 
Clostridium kluyveri DSM 555

Gene: CKL_1155: Flagellar assembly protein FliH
 
Clostridium difficile 630

Gene: CD0250: Flagellar assembly protein FliH
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2660: Flagellar assembly protein FliH
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2160: Flagellar assembly protein FliH
 
Clostridium tetani E88

Gene: CTC01674: Flagellar assembly protein FliH
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar assembly protein FliH
 
Clostridium cellulolyticum H10

Gene: Ccel_2049: Flagellar assembly protein FliH
 
Clostridium sp. SS2/1
Flagellar assembly protein FliH
fliI
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4265: Flagellum-specific ATP synthase FliI
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04555: Flagellum-specific ATP synthase FliI
 
Clostridium butyricum 5521

Gene: CBY_3578: Flagellum-specific ATP synthase FliI
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1482: Flagellum-specific ATP synthase FliI
 
Clostridium kluyveri DSM 555

Gene: CKL_1156: Flagellum-specific ATP synthase FliI
 
Clostridium difficile 630

Gene: CD0251: Flagellum-specific ATP synthase FliI
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2659: Flagellum-specific ATP synthase FliI
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2159: Flagellum-specific ATP synthase FliI
 
Clostridium tetani E88

Gene: CTC01673: Flagellum-specific ATP synthase FliI
 
Clostridium phytofermentans ISDg

Gene: null: Flagellum-specific ATP synthase FliI
 
Clostridium cellulolyticum H10

Gene: Ccel_2048: Flagellum-specific ATP synthase FliI
 
Clostridium sp. SS2/1
Flagellum-specific ATP synthase FliI
fliJ
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4264: Flagellar protein FliJ
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04554: Flagellar protein FliJ
 
Clostridium butyricum 5521

Gene: CBY_3577: Flagellar protein FliJ
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1483: Flagellar protein FliJ
 
Clostridium kluyveri DSM 555

Gene: CKL_1157: Flagellar protein FliJ
 
Clostridium difficile 630

Gene: CD0252: Flagellar protein FliJ
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2658: Flagellar protein FliJ
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2158: Flagellar protein FliJ
 
Clostridium tetani E88

Gene: CTC01672: Flagellar protein FliJ
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar protein FliJ
 
Clostridium cellulolyticum H10

Gene: Ccel_2047: Flagellar protein FliJ
 
Clostridium sp. SS2/1
Flagellar protein FliJ
fliK
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4263: Flagellar hook-length control protein FliK
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04553: Flagellar hook-length control protein FliK
 
Clostridium butyricum 5521

Gene: CBY_3576: Flagellar hook-length control protein FliK
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1485: Flagellar hook-length control protein FliK
 
Clostridium kluyveri DSM 555

Gene: CKL_1158: Flagellar hook-length control protein FliK
 
Clostridium difficile 630

Gene: CD0253: Flagellar hook-length control protein FliK
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2657: Flagellar hook-length control protein FliK
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2157: Flagellar hook-length control protein FliK
 
Clostridium tetani E88

Gene: CTC01671: Flagellar hook-length control protein FliK
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar hook-length control protein FliK
 
Clostridium cellulolyticum H10

Gene: Ccel_2045: Flagellar hook-length control protein FliK
 
Clostridium sp. SS2/1
Flagellar hook-length control protein FliK
flgD
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4262: Flagellar basal-body rod modification protein FlgD
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04552: Flagellar basal-body rod modification protein FlgD
 
Clostridium butyricum 5521

Gene: CBY_3575: Flagellar basal-body rod modification protein FlgD
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1486: Flagellar basal-body rod modification protein FlgD
 
Clostridium kluyveri DSM 555

Gene: CKL_1159: Flagellar basal-body rod modification protein FlgD
 
Clostridium difficile 630

Gene: CD0254: Flagellar basal-body rod modification protein FlgD
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2656: Flagellar basal-body rod modification protein FlgD
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2156: Flagellar basal-body rod modification protein FlgD
 
Clostridium tetani E88

Gene: CTC01669: Flagellar basal-body rod modification protein FlgD
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar basal-body rod modification protein FlgD
 
Clostridium cellulolyticum H10

Gene: Ccel_2044: Flagellar basal-body rod modification protein FlgD
 
Clostridium sp. SS2/1
Flagellar basal-body rod modification protein FlgD
flgE
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4260: Flagellar hook protein FlgE
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04550: Flagellar hook protein FlgE
 
Clostridium butyricum 5521

Gene: CBY_3573: Flagellar hook protein FlgE
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1488: Flagellar hook protein FlgE
 
Clostridium kluyveri DSM 555

Gene: CKL_1160: Flagellar hook protein FlgE
 
Clostridium difficile 630

Gene: CD0255: Flagellar hook protein FlgE
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2654: Flagellar hook protein FlgE
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2154: Flagellar hook protein FlgE
 
Clostridium tetani E88

Gene: CTC01667: Flagellar hook protein FlgE
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar hook protein FlgE
 
Clostridium cellulolyticum H10

Gene: Ccel_2042: Flagellar hook protein FlgE
 
Clostridium sp. SS2/1
Flagellar hook protein FlgE
flbD
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4259: Flagellar protein FlbD
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04549: Flagellar protein FlbD
 
Clostridium butyricum 5521

Gene: CBY_3572: Flagellar protein FlbD
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1489: Flagellar protein FlbD
 
Clostridium kluyveri DSM 555

Gene: CKL_1161: Flagellar protein FlbD
 
Clostridium difficile 630

Gene: CD0255A: Flagellar protein FlbD
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2653: Flagellar protein FlbD
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2153: Flagellar protein FlbD
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar protein FlbD
 
Clostridium cellulolyticum H10

Gene: Ccel_2041: Flagellar protein FlbD
 
Clostridium sp. SS2/1
Flagellar protein FlbD
motA
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04548: Flagellar motor rotation protein MotA
 
Clostridium butyricum 5521

Gene: CBY_3571: Flagellar motor rotation protein MotA
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1490: Flagellar motor rotation protein MotA
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630

Gene: CD0256: Flagellar motor rotation protein MotA
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2652: Flagellar motor rotation protein MotA
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88

Gene: CTC01666: Flagellar motor rotation protein MotA
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar motor rotation protein MotA
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Flagellar motor rotation protein MotA
motB
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3570: Flagellar motor rotation protein MotB
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1491: Flagellar motor rotation protein MotB
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630

Gene: CD0257: Flagellar motor rotation protein MotB
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2651: Flagellar motor rotation protein MotB
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88

Gene: CTC01665: Flagellar motor rotation protein MotB
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar motor rotation protein MotB
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Flagellar motor rotation protein MotB
fliL
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4258: Flagellar biosynthesis protein FliL
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3569: Flagellar biosynthesis protein FliL
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1492: Flagellar biosynthesis protein FliL
 
Clostridium kluyveri DSM 555

Gene: CKL_1162: Flagellar biosynthesis protein FliL
 
Clostridium difficile 630

Gene: CD0258: Flagellar biosynthesis protein FliL
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2650: Flagellar biosynthesis protein FliL
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2152: Flagellar biosynthesis protein FliL
 
Clostridium tetani E88

Gene: CTC01664: Flagellar biosynthesis protein FliL
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar biosynthesis protein FliL
 
Clostridium cellulolyticum H10

Gene: Ccel_2040: Flagellar biosynthesis protein FliL
 
Clostridium sp. SS2/1
Flagellar biosynthesis protein FliL
fliZ
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4257: Flagellar biosynthesis protein FliZ
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3568: Flagellar biosynthesis protein FliZ
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1496: Flagellar biosynthesis protein FliZ
 
Clostridium kluyveri DSM 555

Gene: CKL_1163: Flagellar biosynthesis protein FliZ
 
Clostridium difficile 630

Gene: CD0259: Flagellar biosynthesis protein FliZ
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2649: Flagellar biosynthesis protein FliZ
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2151: Flagellar biosynthesis protein FliZ
 
Clostridium tetani E88

Gene: CTC01663: Flagellar biosynthesis protein FliZ
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar biosynthesis protein FliZ
 
Clostridium cellulolyticum H10

Gene: Ccel_2036: Flagellar biosynthesis protein FliZ
 
Clostridium sp. SS2/1
Flagellar biosynthesis protein FliZ
fliP
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4256: Flagellar biosynthesis protein FliP
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3567: Flagellar biosynthesis protein FliP
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1497: Flagellar biosynthesis protein FliP
 
Clostridium kluyveri DSM 555

Gene: CKL_1164: Flagellar biosynthesis protein FliP
 
Clostridium difficile 630

Gene: CD0260: Flagellar biosynthesis protein FliP
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2648: Flagellar biosynthesis protein FliP
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2150: Flagellar biosynthesis protein FliP
 
Clostridium tetani E88

Gene: CTC01662: Flagellar biosynthesis protein FliP
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar biosynthesis protein FliP
 
Clostridium cellulolyticum H10

Gene: Ccel_2035: Flagellar biosynthesis protein FliP
 
Clostridium sp. SS2/1
Flagellar biosynthesis protein FliP
fliQ
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4255: Flagellar biosynthesis protein FliQ
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3566: Flagellar biosynthesis protein FliQ
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1498: Flagellar biosynthesis protein FliQ
 
Clostridium kluyveri DSM 555

Gene: CKL_1165: Flagellar biosynthesis protein FliQ
 
Clostridium difficile 630

Gene: CD0261: Flagellar biosynthesis protein FliQ
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2647: Flagellar biosynthesis protein FliQ
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2149: Flagellar biosynthesis protein FliQ
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar biosynthesis protein FliQ
 
Clostridium cellulolyticum H10

Gene: Ccel_2034: Flagellar biosynthesis protein FliQ
 
Clostridium sp. SS2/1
Flagellar biosynthesis protein FliQ
fliR/flhB
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4254: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3565: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1500: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
 
Clostridium kluyveri DSM 555

Gene: CKL_1166: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
 
Clostridium difficile 630

Gene: CD0262: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2646: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2148: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
 
Clostridium tetani E88

Gene: CTC01660: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar biosynthesis protein FlhB
 
Clostridium cellulolyticum H10

Gene: Ccel_2032: Flagellar biosynthesis protein FlhB
 
Clostridium sp. SS2/1
Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
flhA
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4253: Flagellar biosynthesis protein FlhA
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04546: Flagellar biosynthesis protein FlhA
 
Clostridium butyricum 5521

Gene: CBY_3564: Flagellar biosynthesis protein FlhA
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1501: Flagellar biosynthesis protein FlhA
 
Clostridium kluyveri DSM 555

Gene: CKL_1167: Flagellar biosynthesis protein FlhA
 
Clostridium difficile 630

Gene: CD0263: Flagellar biosynthesis protein FlhA
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2645: Flagellar biosynthesis protein FlhA
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2147: Flagellar biosynthesis protein FlhA
 
Clostridium tetani E88

Gene: CTC01657: Flagellar biosynthesis protein FlhA
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar biosynthesis protein FlhA
 
Clostridium cellulolyticum H10

Gene: Ccel_2031: Flagellar biosynthesis protein FlhA
 
Clostridium sp. SS2/1
Flagellar biosynthesis protein FlhA
flhF
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4252: Flagellar biosynthesis protein FlhF
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3563: Flagellar biosynthesis protein FlhF
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1502: Flagellar biosynthesis protein FlhF
 
Clostridium kluyveri DSM 555

Gene: CKL_1168: Flagellar biosynthesis protein FlhF
 
Clostridium difficile 630

Gene: CD0264: Flagellar biosynthesis protein FlhF
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2644: Flagellar biosynthesis protein FlhF
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2146: Flagellar biosynthesis protein FlhF
 
Clostridium tetani E88

Gene: CTC01656: Flagellar biosynthesis protein FlhF
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar biosynthesis protein FlhF
 
Clostridium cellulolyticum H10

Gene: Ccel_2030: Flagellar biosynthesis protein FlhF
 
Clostridium sp. SS2/1
Flagellar biosynthesis protein FlhF
fleN
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4251: Flagellar synthesis regulator FleN
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3562: Flagellar synthesis regulator FleN
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1503: Flagellar synthesis regulator FleN
 
Clostridium kluyveri DSM 555

Gene: CKL_1169: Flagellar synthesis regulator FleN
 
Clostridium difficile 630

Gene: CD0265: Flagellar synthesis regulator FleN
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2643: Flagellar synthesis regulator FleN
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2145: Flagellar synthesis regulator FleN
 
Clostridium tetani E88

Gene: CTC01655: Flagellar synthesis regulator FleN
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar synthesis regulator FleN
 
Clostridium cellulolyticum H10

Gene: Ccel_2029: Flagellar synthesis regulator FleN
 
Clostridium sp. SS2/1
Flagellar synthesis regulator FleN
fliA
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4249: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04545: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium butyricum 5521

Gene: CBY_3560: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_1170: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium difficile 630

Gene: CD0266: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2641: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2143: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium tetani E88

Gene: CTC01653: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10

Gene: Ccel_2022: RNA polymerase sigma factor for flagellar operon fliA
 
Clostridium sp. SS2/1
RNA polymerase sigma factor for flagellar operon fliA
Cbei_4248
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4248: hypothetical protein
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521

Gene: CBY_3559: hypothetical protein
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_1171: hypothetical protein
 
Clostridium difficile 630

Gene: CD0267: hypothetical protein
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2640: hypothetical protein
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2142: hypothetical protein
 
Clostridium tetani E88

Gene: CTC01652: hypothetical protein
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
flgF
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4247: Flagellar basal-body rod protein FlgF
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04544: Flagellar basal-body rod protein FlgF
 
Clostridium butyricum 5521

Gene: CBY_3557: Flagellar basal-body rod protein FlgF
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_2550: Flagellar basal-body rod protein FlgF
 
Clostridium kluyveri DSM 555

Gene: CKL_1172: Flagellar basal-body rod protein FlgF
 
Clostridium difficile 630

Gene: CD0268: Flagellar basal-body rod protein FlgF
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2638: Flagellar basal-body rod protein FlgF
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2140: Flagellar basal-body rod protein FlgF
 
Clostridium tetani E88

Gene: CTC01651: Flagellar basal-body rod protein FlgF
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar basal-body rod protein FlgF
 
Clostridium cellulolyticum H10

Gene: Ccel_3101: Flagellar basal-body rod protein FlgF
 
Clostridium sp. SS2/1
Flagellar basal-body rod protein FlgF
flgG
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4246: Flagellar basal-body rod protein FlgG
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04543: Flagellar basal-body rod protein FlgG
 
Clostridium butyricum 5521

Gene: CBY_3556: Flagellar basal-body rod protein FlgG
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_2549: Flagellar basal-body rod protein FlgG
 
Clostridium kluyveri DSM 555

Gene: CKL_1173: Flagellar basal-body rod protein FlgG
 
Clostridium difficile 630

Gene: CD0269: Flagellar basal-body rod protein FlgG
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2637: Flagellar basal-body rod protein FlgG
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2139: Flagellar basal-body rod protein FlgG
 
Clostridium tetani E88

Gene: CTC01650: Flagellar basal-body rod protein FlgG
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar basal-body rod protein FlgG
 
Clostridium cellulolyticum H10

Gene: Ccel_3100: Flagellar basal-body rod protein FlgG
 
Clostridium sp. SS2/1
Flagellar basal-body rod protein FlgG
fliM
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630

Gene: CD0270: Flagellar motor switch protein FliM
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar motor switch protein FliM
 
Clostridium cellulolyticum H10

Gene: Ccel_2039: Flagellar motor switch protein FliM
 
Clostridium sp. SS2/1
Flagellar motor switch protein FliM
fliN
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04547: Flagellar motor switch protein FliN
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs

Gene: Clos_1494: Flagellar motor switch protein FliN
 
Clostridium kluyveri DSM 555
 
Clostridium difficile 630

Gene: CD0271: Flagellar motor switch protein FliN
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg

Gene: null: Flagellar motor switch protein FliN
 
Clostridium cellulolyticum H10

Gene: Ccel_2038: Flagellar motor switch protein FliN
 
Clostridium sp. SS2/1
Flagellar motor switch protein FliN
 
CRON 21.
Cbei_4033
*
Clostridium beijerincki NCIMB 8052

Site:
position = -229
score = 71.85
sequence = GTATTGATAATAGCA...

Gene: Cbei_4033: hypothetical protein
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
*
Clostridium kluyveri DSM 555

Site:
position = -242
score = 70.92
sequence = ATATTGATAATAGCA...

Gene: CKL_3514: hypothetical protein
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
hypothetical protein
fabH
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4032: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
*2
Clostridium kluyveri DSM 555

Site:
position = -207
score = 69.89
sequence = ATTGATAATAGCACA...

Gene: CKL_2324: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)

Gene: CKL_3513: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT

Gene: NT01CX_0098: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0718: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2011: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 2
Clostridium cellulolyticum H10

Gene: Ccel_2885: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)

Gene: Ccel_2887: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
 
Clostridium sp. SS2/1
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
mcp
 
Clostridium beijerincki NCIMB 8052
 
Clostridium bartlettii DSM 16795
 
Clostridium bolteae ATCC BAA-613
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275
 
Clostridium leptum DSM 753
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Clostridium sp. L2-50
 
Clostridium sp. OhILAs
 
Clostridium kluyveri DSM 555

Gene: CKL_2325: Methyl-accepting chemotaxis protein
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
 
Clostridium novyi NT
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium acetobutylicum ATCC 824
 
Clostridium tetani E88
 
Clostridium phytofermentans ISDg
 
Clostridium cellulolyticum H10
 
Clostridium sp. SS2/1
Methyl-accepting chemotaxis protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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