Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485 6 2
Chloroflexus sp. Y-400-fl 6 2
Roseiflexus castenholzii DSM 13941 2 1
Roseiflexus sp. RS-1 4 2
Herpetosiphon aurantiacus ATCC 23779 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribX
*
Chloroflexus aggregans DSM 9485

Site:
position = -280
score = 109.11
sequence = AAACGATCTTCGGGG...

Gene: Cagg_2734: Predicted riboflavin ABC transporter, transmembrane component RibX
*
Chloroflexus sp. Y-400-fl

Site:
position = -279
score = 106.67
sequence = ACGATCTTCGGGGCA...

Gene: Chy400_0882: Predicted riboflavin ABC transporter, transmembrane component RibX
*
Roseiflexus castenholzii DSM 13941

Site:
position = -386
score = 97.63
sequence = CTACGATCTTCGGGG...

Gene: Rcas_2389: Predicted riboflavin ABC transporter, transmembrane component RibX
*
Roseiflexus sp. RS-1

Site:
position = -360
score = 97.3
sequence = GCACGATCTTCGGGG...

Gene: RoseRS_2763: Predicted riboflavin ABC transporter, transmembrane component RibX
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -285
score = 99.73
sequence = TTGGTCTTCAGGGTT...

Gene: Haur_1578: Predicted riboflavin ABC transporter, transmembrane component RibX
Predicted riboflavin ABC transporter, transmembrane component RibX
ribY
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2733: Predicted riboflavin ABC transporter, substrate-binding component RibY
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0883: Predicted riboflavin ABC transporter, substrate-binding component RibY
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2388: Predicted riboflavin ABC transporter, substrate-binding component RibY
 
Roseiflexus sp. RS-1

Gene: RoseRS_2762: Predicted riboflavin ABC transporter, substrate-binding component RibY
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_1579: Predicted riboflavin ABC transporter, substrate-binding component RibY
Predicted riboflavin ABC transporter, substrate-binding component RibY
 
CRON 2.
ribD
*
Chloroflexus aggregans DSM 9485

Site:
position = -335
score = 90.09
sequence = CAAACCTTCGGGGCA...

Gene: Cagg_2639: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Chloroflexus sp. Y-400-fl

Site:
position = -283
score = 111.77
sequence = AAGACCTTCGGGGCA...

Gene: Chy400_2370: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2423: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2640: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2371: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Roseiflexus castenholzii DSM 13941
*
Roseiflexus sp. RS-1

Site:
position = -385
score = 93.07
sequence = AGAACCTTCGGGGCA...

Gene: RoseRS_0969: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_1304: Riboflavin synthase alpha chain (EC 2.5.1.9)
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2641: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2372: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1

Gene: RoseRS_0970: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Herpetosiphon aurantiacus ATCC 23779
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)
ribH
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2642: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2373: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_1586: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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