Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HrsM - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692 3 1
Desulfomicrobium baculatum DSM 4028 7 3
Desulfovibrio desulfuricans G20 2 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1 1 1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 4 3
Desulfovibrio vulgaris Hildenborough 4 2
Desulfovibrio vulgaris str. Miyazaki F 4 2
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ahpC
 2
Desulfohalobium retbaense DSM 5692

Gene: Dret_1862: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)

Gene: Dret_1861: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
*2
Desulfomicrobium baculatum DSM 4028

Site:
position = -36
score = 4.84237
sequence = TATCGTTATCATCAATA

Gene: Dbac_2098: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)

Gene: Dbac_2099: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0602: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
 
Desulfovibrio magneticus RS-1

Gene: DMR_07700: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
 
Desulfovibrio piger ATCC 29098
*2
Desulfovibrio salexigens DSM 2638

Site:
position = -83
score = 4.73034
sequence = TATCGACTTTTTTGATA

Gene: Desal_0898: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)

Gene: Desal_0033: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0219: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
 
Lawsonia intracellularis PHE/MN1-00
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
 
CRON 2.
hysB
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -117
score = 4.84648
sequence = GATCGTGATTTTCGATC

Gene: Dbac_1970: periplasmic [NiFeSe] hydrogenase, small subunit
*
Desulfovibrio desulfuricans G20

Site:
position = -217
score = 4.10472
sequence = TATCAGAATTCTTGATA

Site:
position = -153
score = 4.97165
sequence = GATTGTATTTTTCTATC

Gene: Dde_2134: periplasmic [NiFeSe] hydrogenase, small subunit
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00297: periplasmic [NiFeSe] hydrogenase, small subunit
*
Desulfovibrio salexigens DSM 2638

Site:
position = -160
score = 5.0893
sequence = TATTTGTTTTATCTATA

Gene: Desal_2050: periplasmic [NiFeSe] hydrogenase, small subunit
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -147
score = 4.32897
sequence = CATCACCTTTTTCGATG

Gene: DVU1917: periplasmic [NiFeSe] hydrogenase, small subunit
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -152
score = 4.77115
sequence = AATCACTTTTTTCTATC

Gene: DvMF_0274: periplasmic [NiFeSe] hydrogenase, small subunit
 
Lawsonia intracellularis PHE/MN1-00
periplasmic [NiFeSe] hydrogenase, small subunit
hysA
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1969: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
 
Desulfovibrio desulfuricans G20

Gene: Dde_2135: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00296: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2049: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1918: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0273: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
 
Lawsonia intracellularis PHE/MN1-00
periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
 
CRON 3.
hrsM
*
Desulfohalobium retbaense DSM 5692

Site:
position = -275
score = 5.24442
sequence = CATAGATTTTCTCTATA

Gene: Dret_2037: transcriptional regulator, LysR family
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -33
score = 5.24049
sequence = TATCGTTTTCGTCTATA

Gene: Dbac_2747: transcriptional regulator, LysR family
 
Desulfovibrio desulfuricans G20

Gene: Dde_2226: transcriptional regulator, LysR family
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio magneticus RS-1

Site:
position = -23
score = 5.1231
sequence = GATCAGTTTTTTCGATA

Gene: DMR_12480: transcriptional regulator, LysR family
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -28
score = 5.51483
sequence = TATAGATATTTTCGATA

Gene: Desal_1213: transcriptional regulator, LysR family
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -29
score = 4.77916
sequence = TATTGGGATATTCGATA

Site:
position = -20
score = 3.87571
sequence = ATTCGATATATCCTATA

Gene: DVU1331: transcriptional regulator, LysR family
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -29
score = 4.50871
sequence = TATCGTTTCCATCAATA

Gene: DvMF_0108: transcriptional regulator, LysR family
 
Lawsonia intracellularis PHE/MN1-00
transcriptional regulator, LysR family
selD
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_2036: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -132
score = 4.0345
sequence = GATAGAATTTTTCAAAA

Gene: Dbac_2746: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
 
Desulfovibrio desulfuricans G20

Gene: Dde_2225: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0689: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
 
Desulfovibrio magneticus RS-1

Gene: DMR_20900: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02675: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0640: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1332: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0107: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
 
Lawsonia intracellularis PHE/MN1-00
Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
Dret_2035
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_2035: iron-sulfur cluster-binding protein, putative
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2745: iron-sulfur cluster-binding protein, putative
 
Desulfovibrio desulfuricans G20

Gene: Dde_2711: iron-sulfur cluster-binding protein, putative
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1835: iron-sulfur cluster-binding protein, putative
 
Desulfovibrio magneticus RS-1

Gene: DMR_17970: iron-sulfur cluster-binding protein, putative
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02461: iron-sulfur cluster-binding protein, putative
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2803: iron-sulfur cluster-binding protein, putative
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0908: iron-sulfur cluster-binding protein, putative
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1398: iron-sulfur cluster-binding protein, putative
 
Lawsonia intracellularis PHE/MN1-00
iron-sulfur cluster-binding protein, putative
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD