Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PhnR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Phosphonate utilization; 2-aminoethylphosphonate utilization
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 30 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 14 6
Pseudomonas entomophila L48 7 2
Pseudomonas putida KT2440 7 2
Pseudomonas syringae pv. tomato str. DC3000 7 2
Pseudomonas fluorescens Pf-5 7 2
Pseudomonas mendocina ymp 8 3
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
phnS
*
Pseudomonas aeruginosa PAO1

Site:
position = -348
score = 5.34652
sequence = TGGTCTAGTCCA

Site:
position = -93
score = 5.41372
sequence = TGATCTAGACCA

Gene: PA3250: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
*
Pseudomonas entomophila L48

Site:
position = -310
score = 5.30308
sequence = TGGACTAGTCCA

Site:
position = -76
score = 5.31593
sequence = TGACCTAGACCA

Gene: PSEEN1438: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
*
Pseudomonas putida KT2440

Site:
position = -311
score = 5.30308
sequence = TGGACTAGTCCA

Site:
position = -88
score = 5.31593
sequence = TGACCTAGACCA

Gene: PP1726: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -345
score = 5.37028
sequence = TGGACTAGACCA

Site:
position = -65
score = 5.41372
sequence = TGATCTAGACCA

Gene: PSPTO3878: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
*
Pseudomonas fluorescens Pf-5

Site:
position = -348
score = 5.37028
sequence = TGGACTAGACCA

Site:
position = -69
score = 5.31593
sequence = TGACCTAGACCA

Gene: PFL_4387: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
*
Pseudomonas mendocina ymp

Site:
position = -300
score = 5.30308
sequence = TGGACTAGTCCA

Site:
position = -38
score = 5.41372
sequence = TGATCTAGACCA

Gene: Pmen_1332: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
PF01663
 
Pseudomonas aeruginosa PAO1

Gene: PA3251: type I phosphodiesterase
 
Pseudomonas entomophila L48

Gene: PSEEN1437: type I phosphodiesterase
 
Pseudomonas putida KT2440

Gene: PP1725: type I phosphodiesterase
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3879: type I phosphodiesterase
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4388: type I phosphodiesterase
 
Pseudomonas mendocina ymp

Gene: Pmen_1331: type I phosphodiesterase
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
type I phosphodiesterase
phnU
 
Pseudomonas aeruginosa PAO1

Gene: PA3252: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Pseudomonas entomophila L48

Gene: PSEEN1436: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Pseudomonas putida KT2440

Gene: PP1724: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3880: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4389: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Pseudomonas mendocina ymp

Gene: Pmen_1330: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
phnV
 
Pseudomonas aeruginosa PAO1

Gene: PA3253: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Pseudomonas entomophila L48

Gene: PSEEN1435: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Pseudomonas putida KT2440

Gene: PP1723: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3881: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4390: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Pseudomonas mendocina ymp

Gene: Pmen_1329: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
phnT
 
Pseudomonas aeruginosa PAO1

Gene: PA3254: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Pseudomonas entomophila L48

Gene: PSEEN1434: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Pseudomonas putida KT2440

Gene: PP1722: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3882: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4391: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Pseudomonas mendocina ymp

Gene: Pmen_1328: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
COG0560
*3
Pseudomonas aeruginosa PAO1

Gene: PA1143: Phosphoserine phosphatase (EC 3.1.3.3)

Site:
position = -50
score = 4.67873
sequence = TGGACGAGACCA

Gene: PA3255: Phosphoserine phosphatase (EC 3.1.3.3)

Gene: PA3255: Phosphoserine phosphatase (EC 3.1.3.3)
 
Pseudomonas entomophila L48

Gene: PSEEN1433: Phosphoserine phosphatase (EC 3.1.3.3)
 
Pseudomonas putida KT2440

Gene: PP1721: Phosphoserine phosphatase (EC 3.1.3.3)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3883: Phosphoserine phosphatase (EC 3.1.3.3)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4392: Phosphoserine phosphatase (EC 3.1.3.3)
 
Pseudomonas mendocina ymp

Gene: Pmen_1327: Phosphoserine phosphatase (EC 3.1.3.3)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Phosphoserine phosphatase (EC 3.1.3.3)
PA1144
*
Pseudomonas aeruginosa PAO1

Site:
position = -263
score = 5.41372
sequence = TGGTCTAGACCA

Site:
position = -84
score = 5.31593
sequence = TGGCCTAGACCA

Gene: PA1144: probable MFS transporter
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
probable MFS transporter
phnR2
 
Pseudomonas aeruginosa PAO1

Gene: PA1142: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
CRON 2.
phnX
*2
Pseudomonas aeruginosa PAO1

Site:
position = -31
score = 5.31593
sequence = TGGCCTAGACCA

Gene: PA2803: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)

Gene: PA1311: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
 
Pseudomonas entomophila L48

Gene: PSEEN3554: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
 
Pseudomonas putida KT2440

Gene: PP2208: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2114: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
 2
Pseudomonas fluorescens Pf-5

Gene: PFL_3966: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)

Gene: PFL_1969: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
*
Pseudomonas mendocina ymp

Site:
position = -29
score = 4.78952
sequence = TGGACTAGGCCA

Gene: Pmen_1925: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
COG4341
 
Pseudomonas aeruginosa PAO1

Gene: PA2804: COG4341: Predicted HD phosphohydrolase
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
COG4341: Predicted HD phosphohydrolase
 
CRON 3.
phnR3
*
Pseudomonas aeruginosa PAO1

Site:
position = -114
score = 4.83296
sequence = TGGTCTAGGCCA

Gene: PA2802: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
CRON 4.
phnR
*
Pseudomonas aeruginosa PAO1

Site:
position = -27
score = 5.37028
sequence = TGGACTAGACCA

Site:
position = -282
score = 4.72217
sequence = TGGTCTAGATCA

Gene: PA3249: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
*
Pseudomonas entomophila L48

Site:
position = -261
score = 4.14141
sequence = TGGTCTAGGTCA

Site:
position = -27
score = 5.30308
sequence = TGGACTAGTCCA

Gene: PSEEN1439: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
*
Pseudomonas putida KT2440

Site:
position = -28
score = 5.30308
sequence = TGGACTAGTCCA

Site:
position = -251
score = 4.14141
sequence = TGGTCTAGGTCA

Gene: PP1727: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -304
score = 4.72217
sequence = TGGTCTAGATCA

Site:
position = -24
score = 5.34652
sequence = TGGTCTAGTCCA

Gene: PSPTO3877: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
*
Pseudomonas fluorescens Pf-5

Site:
position = -305
score = 4.14141
sequence = TGGTCTAGGTCA

Site:
position = -26
score = 5.34652
sequence = TGGTCTAGTCCA

Gene: PFL_4386: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
*
Pseudomonas mendocina ymp

Site:
position = -289
score = 4.72217
sequence = TGGTCTAGATCA

Site:
position = -27
score = 5.30308
sequence = TGGACTAGTCCA

Gene: Pmen_1333: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
2-aminoethylphosphonate uptake and metabolism regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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