Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PhnF - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Phosphonate utilization
Effector:
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 10 1
Pseudomonas entomophila L48
Pseudomonas putida KT2440
Pseudomonas syringae pv. tomato str. DC3000 10 1
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp 10 1
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
phnF
*
Pseudomonas aeruginosa PAO1

Site:
position = 24
score = 5.18164
sequence = TTGTCTAGACAA

Gene: PA3381: Transcriptional regulator for phosphonates utilization, GntR family
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = 6
score = 5.18164
sequence = TTGTCTAGACAA

Gene: PSPTO2558: Transcriptional regulator for phosphonates utilization, GntR family
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = 24
score = 5.18164
sequence = TTGTCTAGACAA

Gene: Pmen_2887: Transcriptional regulator for phosphonates utilization, GntR family
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Transcriptional regulator for phosphonates utilization, GntR family
phnG
 
Pseudomonas aeruginosa PAO1

Gene: PA3380: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2559: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2886: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
phnH
 
Pseudomonas aeruginosa PAO1

Gene: PA3379: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2560: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2885: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
phnI
 
Pseudomonas aeruginosa PAO1

Gene: PA3378: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2561: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2884: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
phnJ
 
Pseudomonas aeruginosa PAO1

Gene: PA3377: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2562: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2883: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
phnK
 
Pseudomonas aeruginosa PAO1

Gene: PA3376: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2563: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2882: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
phnL
 
Pseudomonas aeruginosa PAO1

Gene: PA3375: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2564: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2881: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
pnhM
 
Pseudomonas aeruginosa PAO1

Gene: PA3374: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2565: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2880: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
phnN
 
Pseudomonas aeruginosa PAO1

Gene: PA3373: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2566: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2879: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
phnP
 
Pseudomonas aeruginosa PAO1

Gene: PA3372: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2567: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_2878: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD