Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PhnF - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Phosphonate utilization
Effector:
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396
Marinobacter aqueolei 26 2
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PhnF
 
Hahella chejuensis KCTC 2396
*2
Marinobacter aqueolei

Site:
position = -10
score = 4.52217
sequence = TTGTATAGACAT

Gene: Maqu_4033: phosphonates metabolism transcriptional regulator PhnF

Site:
position = -10
score = 4.52217
sequence = TTGTATAGACAT

Gene: Maqu_0213: phosphonates metabolism transcriptional regulator PhnF
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
phosphonates metabolism transcriptional regulator PhnF
phnD
 
Hahella chejuensis KCTC 2396
 3
Marinobacter aqueolei

Gene: Maqu_4034: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)

Gene: Maqu_0214: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)

Gene: Maqu_3254: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Marinobacter sp. ELB17

Gene: MELB17_10468: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
phnC
 
Hahella chejuensis KCTC 2396
 2
Marinobacter aqueolei

Gene: Maqu_4035: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)

Gene: Maqu_0215: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
phnE
 
Hahella chejuensis KCTC 2396
 4
Marinobacter aqueolei

Gene: Maqu_2287: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)

Gene: Maqu_4036: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)

Gene: Maqu_4151: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)

Gene: Maqu_0216: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)
 
Marinobacter sp. ELB17

Gene: MELB17_10463: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)
phnG
 
Hahella chejuensis KCTC 2396
*4
Marinobacter aqueolei

Gene: Maqu_2289: putative phosphonate metabolism protein PhnG; K06166 PhnG protein

Site:
position = -35
score = 4.39031
sequence = ATGTATAGACAT

Gene: Maqu_4037: putative phosphonate metabolism protein PhnG; K06166 PhnG protein

Gene: Maqu_4149: putative phosphonate metabolism protein PhnG; K06166 PhnG protein

Site:
position = -35
score = 4.39031
sequence = ATGTATAGACAT

Gene: Maqu_0217: putative phosphonate metabolism protein PhnG; K06166 PhnG protein
 
Marinobacter sp. ELB17

Gene: MELB17_10458: putative phosphonate metabolism protein PhnG; K06166 PhnG protein
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
putative phosphonate metabolism protein PhnG; K06166 PhnG protein
phnH
 
Hahella chejuensis KCTC 2396
 4
Marinobacter aqueolei

Gene: Maqu_2290: carbon-phosphorus lyase complex subunit phnH

Gene: Maqu_4038: carbon-phosphorus lyase complex subunit phnH

Gene: Maqu_4148: carbon-phosphorus lyase complex subunit phnH

Gene: Maqu_0218: carbon-phosphorus lyase complex subunit phnH
 
Marinobacter sp. ELB17

Gene: MELB17_10453: carbon-phosphorus lyase complex subunit phnH
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
carbon-phosphorus lyase complex subunit phnH
phnI
 
Hahella chejuensis KCTC 2396
 4
Marinobacter aqueolei

Gene: Maqu_4039: phosphonate metabolism protein PhnI

Gene: Maqu_4147: phosphonate metabolism protein PhnI

Gene: Maqu_2291: phosphonate metabolism protein PhnI

Gene: Maqu_0219: phosphonate metabolism protein PhnI
 
Marinobacter sp. ELB17

Gene: MELB17_10448: phosphonate metabolism protein PhnI
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
phosphonate metabolism protein PhnI
phnJ
 
Hahella chejuensis KCTC 2396
 4
Marinobacter aqueolei

Gene: Maqu_0220: carbon-phosphorus lyase complex subunit phnJ

Gene: Maqu_4040: carbon-phosphorus lyase complex subunit phnJ

Gene: Maqu_2292: carbon-phosphorus lyase complex subunit phnJ

Gene: Maqu_4146: carbon-phosphorus lyase complex subunit phnJ
 
Marinobacter sp. ELB17

Gene: MELB17_10443: carbon-phosphorus lyase complex subunit phnJ
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
carbon-phosphorus lyase complex subunit phnJ
phnK
 
Hahella chejuensis KCTC 2396
 4
Marinobacter aqueolei

Gene: Maqu_0221: Phosphonates transport ATP-binding protein PhnK

Gene: Maqu_4145: Phosphonates transport ATP-binding protein PhnK

Gene: Maqu_4041: Phosphonates transport ATP-binding protein PhnK

Gene: Maqu_2293: Phosphonates transport ATP-binding protein PhnK
 
Marinobacter sp. ELB17

Gene: MELB17_10438: Phosphonates transport ATP-binding protein PhnK
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Phosphonates transport ATP-binding protein PhnK
phnL
 
Hahella chejuensis KCTC 2396
 4
Marinobacter aqueolei

Gene: Maqu_0222: Phosphonates transport ATP-binding protein PhnL

Gene: Maqu_4144: Phosphonates transport ATP-binding protein PhnL

Gene: Maqu_4042: Phosphonates transport ATP-binding protein PhnL

Gene: Maqu_2294: Phosphonates transport ATP-binding protein PhnL
 
Marinobacter sp. ELB17

Gene: MELB17_10433: Phosphonates transport ATP-binding protein PhnL
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Phosphonates transport ATP-binding protein PhnL
phnM
 
Hahella chejuensis KCTC 2396
 2
Marinobacter aqueolei

Gene: Maqu_4043: Metal-dependent hydrolase involved in phosphonate metabolism

Gene: Maqu_0223: Metal-dependent hydrolase involved in phosphonate metabolism
 
Marinobacter sp. ELB17

Gene: MELB17_10428: Metal-dependent hydrolase involved in phosphonate metabolism
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Metal-dependent hydrolase involved in phosphonate metabolism
phnN
 
Hahella chejuensis KCTC 2396
 4
Marinobacter aqueolei

Gene: Maqu_0224: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)

Gene: Maqu_4142: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)

Gene: Maqu_4044: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)

Gene: Maqu_2296: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)
 
Marinobacter sp. ELB17

Gene: MELB17_10423: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92

Gene: MED92_11564: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)
phnP
 
Hahella chejuensis KCTC 2396
 4
Marinobacter aqueolei

Gene: Maqu_0225: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein

Gene: Maqu_4141: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein

Gene: Maqu_4045: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein

Gene: Maqu_2297: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein
 
Marinobacter sp. ELB17

Gene: MELB17_10478: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD