Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog VanR - Caulobacterales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 3 2
Caulobacter segnis ATCC 21756 3 2
Caulobacter sp. K31 3 1
Phenylobacterium zucineum HLK1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
vanA
*
Caulobacter crescentus CB15

Site:
position = -98
score = 5.51815
sequence = ATTGGATCCAAT

Site:
position = -59
score = 5.51815
sequence = ATTGGATCCAAT

Gene: CC2393: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
*
Caulobacter segnis ATCC 21756

Site:
position = -43
score = 5.51815
sequence = ATTGGATCCAAT

Site:
position = -82
score = 5.51815
sequence = ATTGGATCCAAT

Gene: Cseg_2340: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
*
Caulobacter sp. K31

Site:
position = -31
score = 4.10553
sequence = ATTGTATACAAT

Gene: Caul_1137: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Phenylobacterium zucineum HLK1
Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
vanR
*
Caulobacter crescentus CB15

Site:
position = -94
score = 5.51815
sequence = ATTGGATCCAAT

Site:
position = -55
score = 5.51815
sequence = ATTGGATCCAAT

Gene: CC2392: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
*
Caulobacter segnis ATCC 21756

Site:
position = -70
score = 5.51815
sequence = ATTGGATCCAAT

Site:
position = -109
score = 5.51815
sequence = ATTGGATCCAAT

Gene: Cseg_2339: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Caulobacter sp. K31

Gene: Caul_1138: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Phenylobacterium zucineum HLK1
Transcriptional regulator for ferulate or vanillate catabolism, GntR family
vanB
 
Caulobacter crescentus CB15

Gene: CC2394: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_2341: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Caulobacter sp. K31

Gene: Caul_1139: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Phenylobacterium zucineum HLK1
Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD