Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog VanR - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 18 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021
Rhizobium sp. NGR234
Rhizobium leguminosarum bv. viciae 3841 3 2
Rhizobium etli CFN 42
Agrobacterium tumefaciens str. C58 (Cereon) 3 3
Mesorhizobium sp. BNC1
Mesorhizobium loti MAFF303099
Brucella melitensis 16M
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009 3 1
Bradyrhizobium japonicum USDA 110 3 1
Bradyrhizobium sp. BTAi1 3 1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
vanA
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
*
Rhodopseudomonas palustris CGA009

Site:
position = -108
score = 4.89898
sequence = TGTATACA

Site:
position = -44
score = 4.89898
sequence = TGTATACA

Gene: RPA3619: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
*
Bradyrhizobium japonicum USDA 110

Site:
position = -99
score = 4.08248
sequence = TGTATACT

Site:
position = -25
score = 4.89898
sequence = TGTATACA

Gene: blr2390: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
*
Bradyrhizobium sp. BTAi1

Site:
position = -68
score = 4.89898
sequence = TGTATACA

Site:
position = -132
score = 4.08248
sequence = TGTATACC

Gene: BBta_2184: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
vanR
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -246
score = 4.89898
sequence = TGTATACA

Site:
position = -100
score = 4.08248
sequence = GGTATACA

Gene: pRL90257: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Rhizobium etli CFN 42
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -195
score = 4.08248
sequence = TGAATACA

Site:
position = -79
score = 4.89898
sequence = TGTATACA

Site:
position = -279
score = 4.89898
sequence = TGTATACA

Gene: Atu1419: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3620: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Bradyrhizobium japonicum USDA 110

Gene: blr2391: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2185: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Transcriptional regulator for ferulate or vanillate catabolism, GntR family
vanB
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium etli CFN 42
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009

Gene: RPA3621: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Bradyrhizobium japonicum USDA 110

Gene: blr2392: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2186: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
CRON 2.
metF
 
Sinorhizobium meliloti 1021

Gene: SMa2143: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Rhizobium sp. NGR234
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -196
score = 4.08248
sequence = TGTATACC

Site:
position = -50
score = 4.89898
sequence = TGTATACA

Gene: pRL90256: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Rhizobium etli CFN 42
*2
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1764: methylenetetrahydrofolate reductase

Site:
position = -36
score = 4.89898
sequence = TGTATACA

Site:
position = -236
score = 4.89898
sequence = TGTATACA

Site:
position = -120
score = 4.08248
sequence = TGTATTCA

Gene: Atu1418: methylenetetrahydrofolate reductase
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
gcvT
 
Sinorhizobium meliloti 1021
 
Rhizobium sp. NGR234
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL90255: vanillate/3-O-methylgallate O-demethylase
 
Rhizobium etli CFN 42
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -225
score = 4.08248
sequence = TGAATACA

Site:
position = -37
score = 4.89898
sequence = TGTATACA

Gene: Atu1420: vanillate/3-O-methylgallate O-demethylase
 
Mesorhizobium sp. BNC1
 
Mesorhizobium loti MAFF303099
 
Brucella melitensis 16M
 
Bartonella quintana str. Toulouse
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Azorhizobium caulinodans ORS 571
 
Xanthobacter autotrophicus Py2
vanillate/3-O-methylgallate O-demethylase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD