Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog VanR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1 6 2
Delftia acidovorans SPH-1 2 1
Polaromonas naphthalenivorans CJ2 8 1
Polaromonas sp. JS666 8 1
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 2 1
Verminephrobacter eiseniae EF01-2 1 1
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
vanR
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -46
score = 4.89898
sequence = TGTATACA

Site:
position = -111
score = 4.89898
sequence = TGTATACA

Gene: CtesDRAFT_3110: Transcriptional regulator for vanillate metabolism, GntR family
*
Delftia acidovorans SPH-1

Site:
position = -101
score = 4.89898
sequence = TGTATACA

Site:
position = -37
score = 4.89898
sequence = TGTATACA

Site:
position = -142
score = 4.89898
sequence = TGTATACA

Gene: Daci_1351: Transcriptional regulator for vanillate metabolism, GntR family
*
Polaromonas naphthalenivorans CJ2

Site:
position = -137
score = 4.89898
sequence = TGTATACA

Site:
position = -201
score = 4.08248
sequence = TGAATACA

Gene: Pnap_2731: Transcriptional regulator for vanillate metabolism, GntR family
 
Polaromonas sp. JS666

Gene: Bpro_3386: Transcriptional regulator for vanillate metabolism, GntR family
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -103
score = 4.08248
sequence = TGTGTACA

Site:
position = -38
score = 4.89898
sequence = TGTATACA

Gene: Vapar_1746: Transcriptional regulator for vanillate metabolism, GntR family
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Transcriptional regulator for vanillate metabolism, GntR family
Pnap_2730
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2730: ABC transporter substrate-binding protein
 
Polaromonas sp. JS666

Gene: Bpro_3384: ABC transporter substrate-binding protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0288: ABC transporter substrate-binding protein
 
Variovorax paradoxus S110

Gene: Vapar_1747: ABC transporter substrate-binding protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0159: ABC transporter substrate-binding protein
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
ABC transporter substrate-binding protein
CtesDRAFT_4799
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4799: ABC transporter permease protein
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2729: ABC transporter permease protein
 2
Polaromonas sp. JS666

Gene: Bpro_5149: ABC transporter permease protein

Gene: Bpro_3383: ABC transporter permease protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0289: ABC transporter permease protein
 
Variovorax paradoxus S110

Gene: Vapar_1748: ABC transporter permease protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0160: ABC transporter permease protein
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
ABC transporter permease protein
CtesDRAFT_4800
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4800: ABC transporter permease protein
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2728: ABC transporter permease protein
 2
Polaromonas sp. JS666

Gene: Bpro_5148: ABC transporter permease protein

Gene: Bpro_3382: ABC transporter permease protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0290: ABC transporter permease protein
 
Variovorax paradoxus S110

Gene: Vapar_1749: ABC transporter permease protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0161: ABC transporter permease protein
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
ABC transporter permease protein
CtesDRAFT_4801
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -150
score = 4.08248
sequence = TGTTTACA

Gene: CtesDRAFT_4801: ABC transporter ATP-binding protein
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2727: ABC transporter ATP-binding protein
 2
Polaromonas sp. JS666

Gene: Bpro_3381: ABC transporter ATP-binding protein

Gene: Bpro_5147: ABC transporter ATP-binding protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0291: ABC transporter ATP-binding protein
 
Variovorax paradoxus S110

Gene: Vapar_1750: ABC transporter ATP-binding protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0162: ABC transporter ATP-binding protein
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
ABC transporter ATP-binding protein
CtesDRAFT_4802
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4802: ABC transporter ATP-binding protein
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2726: ABC transporter ATP-binding protein
 2
Polaromonas sp. JS666

Gene: Bpro_3380: ABC transporter ATP-binding protein

Gene: Bpro_5146: ABC transporter ATP-binding protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0292: ABC transporter ATP-binding protein
 
Variovorax paradoxus S110

Gene: Vapar_1751: ABC transporter ATP-binding protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0163: ABC transporter ATP-binding protein
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
ABC transporter ATP-binding protein
vanA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3109: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Delftia acidovorans SPH-1

Gene: Daci_1352: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2725: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
*
Polaromonas sp. JS666

Site:
position = -18
score = 4.89898
sequence = TGTATACA

Site:
position = -81
score = 4.08248
sequence = TGAATACA

Gene: Bpro_3387: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0280: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Variovorax paradoxus S110

Gene: Vapar_5693: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -82
score = 4.08248
sequence = TGTGTACA

Site:
position = 1
score = 4.08248
sequence = TGTATCCA

Gene: Veis_1485: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1335: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
vanB
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_1076: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Delftia acidovorans SPH-1

Gene: Daci_1356: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2724: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Polaromonas sp. JS666

Gene: Bpro_3385: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0281: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Variovorax paradoxus S110

Gene: Vapar_5694: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1371: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1334: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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