Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog VanR - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396
Marinobacter aqueolei
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1 3 2
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043 3 2
Reinekea sp. MED297
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
vanR
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
*
Marinomonas sp. MWYL1

Site:
position = -195
score = 5.51815
sequence = ATTGGATCCAAT

Site:
position = -143
score = 5.37299
sequence = ATTGGATCCATT

Site:
position = -134
score = 3.73581
sequence = ATTTGATGCATA

Site:
position = -74
score = 5.51815
sequence = ATTGGATCCAAT

Gene: Mmwyl1_1295: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -91
score = 5.03557
sequence = TTTGGATCCAAA

Site:
position = -39
score = 4.64244
sequence = GTTGGATCCAAA

Gene: Csal_0345: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
CRON 2.
vanA
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
*
Marinomonas sp. MWYL1

Site:
position = -161
score = 5.51815
sequence = ATTGGATCCAAT

Site:
position = -101
score = 3.74145
sequence = TATGCATCAAAT

Site:
position = -92
score = 5.41207
sequence = AATGGATCCAAT

Site:
position = -40
score = 5.51815
sequence = ATTGGATCCAAT

Gene: Mmwyl1_1296: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -47
score = 5.03557
sequence = TTTGGATCCAAA

Site:
position = -99
score = 4.91389
sequence = TTTGGATCCAAC

Gene: Csal_0344: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
vanB
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_1297: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0343: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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