Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog VanR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 8 5
Alteromonas macleodii 'Deep ecotype'
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H
Alteromonadales bacterium TW-7
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Patl_0867
*2
Pseudoalteromonas atlantica T6c

Site:
position = -1
score = 4.3026
sequence = TATGTATCCATT

Gene: Patl_0867: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)

Site:
position = -260
score = 3.81445
sequence = CTTCGATCCAAC

Site:
position = -63
score = 3.74145
sequence = TATTCATCCAAT

Gene: Patl_0852: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
doxX
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0868: conserved membrane protein
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
conserved membrane protein
vanB
*
Pseudoalteromonas atlantica T6c

Site:
position = -94
score = 3.62896
sequence = TGTGGATGCAGT

Gene: Patl_0869: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
CRON 2.
Patl_0858
*
Pseudoalteromonas atlantica T6c

Site:
position = -200
score = 5.26014
sequence = TTTGGATCCAAT

Site:
position = -164
score = 3.84753
sequence = TTTGGCTGCAAT

Gene: Patl_0858: Rieske (2Fe-2S) region, ferredoxin
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Rieske (2Fe-2S) region, ferredoxin
Patl_0859
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0859: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
 
CRON 3.
vanA
*
Pseudoalteromonas atlantica T6c

Site:
position = -85
score = 5.51815
sequence = ATTGGATCCAAT

Site:
position = -32
score = 5.06582
sequence = AATGGATCCAAC

Site:
position = -202
score = 5.51815
sequence = ATTGGATCCAAT

Gene: Patl_0844: vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-)
 
CRON 4.
vanR
*
Pseudoalteromonas atlantica T6c

Site:
position = -242
score = 4.72185
sequence = GTTGGATCCATT

Site:
position = -72
score = 5.51815
sequence = ATTGGATCCAAT

Site:
position = -189
score = 5.51815
sequence = ATTGGATCCAAT

Gene: Patl_0845: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Transcriptional regulator for ferulate or vanillate catabolism, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD