Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuQ - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243 5 2
Burkholderia mallei ATCC 23344 5 2
Burkholderia sp. 383 5 2
Burkholderia cepacia AMMD 5 2
Burkholderia vietnamiensis G4 5 2
Burkholderia glumae BGR1 5 2
Burkholderia xenovorans LB400 9 4
Burkholderia phymatum STM815 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
liuQ
*
Burkholderia pseudomallei K96243

Site:
position = -167
score = 5.21909
sequence = TTGAGTCTTGCTCAA

Site:
position = -67
score = 5.30739
sequence = TTGAGCGACACTCAG

Gene: BPSS1449: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
*
Burkholderia mallei ATCC 23344

Site:
position = -167
score = 5.21909
sequence = TTGAGTCTTGCTCAA

Site:
position = -67
score = 5.26551
sequence = TTGAGCAACACTCAG

Gene: BMAA0801: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
*
Burkholderia sp. 383

Site:
position = -129
score = 5.23039
sequence = CTGAGTTTCGCTCAA

Site:
position = -28
score = 5.40562
sequence = TTGAGTGACACTCAG

Gene: Bcep18194_B0422: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
*
Burkholderia cepacia AMMD

Site:
position = -28
score = 5.36374
sequence = TTGAGTGATACTCAG

Site:
position = -130
score = 5.23039
sequence = CTGAGTTTCGCTCAA

Gene: Bamb_4589: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
*
Burkholderia vietnamiensis G4

Site:
position = -131
score = 5.23039
sequence = CTGAGTTTCGCTCAA

Site:
position = -29
score = 5.40562
sequence = TTGAGTGACACTCAG

Gene: Bcep1808_3496: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
*
Burkholderia glumae BGR1

Site:
position = -175
score = 5.01185
sequence = CTGAGTTTTGCTCAG

Site:
position = -74
score = 5.58227
sequence = TTGAGTGACACTCAA

Gene: bglu_2g11310: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
*2
Burkholderia xenovorans LB400

Site:
position = -126
score = 5.36374
sequence = TTGAGTATCACTCAG

Gene: Bxe_B0959: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family

Site:
position = -136
score = 4.95288
sequence = TTGAGTTTAGCTCAT

Site:
position = -50
score = 5.18397
sequence = TTGAGCTAGACTCAA

Gene: Bxe_A1393: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
*
Burkholderia phymatum STM815

Site:
position = -104
score = 5.58227
sequence = TTGAGTGTCACTCAA

Gene: Bphy_3563: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
 
CRON 2.
liuA
*
Burkholderia pseudomallei K96243

Site:
position = -155
score = 5.30739
sequence = CTGAGTGTCGCTCAA

Site:
position = -55
score = 5.21909
sequence = TTGAGCAAGACTCAA

Gene: BPSS1448: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia mallei ATCC 23344

Site:
position = -155
score = 5.26551
sequence = CTGAGTGTTGCTCAA

Site:
position = -55
score = 5.21909
sequence = TTGAGCAAGACTCAA

Gene: BMAA0802: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia sp. 383

Site:
position = -94
score = 5.40562
sequence = CTGAGTGTCACTCAA

Site:
position = 7
score = 5.23039
sequence = TTGAGCGAAACTCAG

Gene: Bcep18194_B0423: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia cepacia AMMD

Site:
position = -158
score = 5.36374
sequence = CTGAGTATCACTCAA

Site:
position = -56
score = 5.23039
sequence = TTGAGCGAAACTCAG

Gene: Bamb_4588: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia vietnamiensis G4

Site:
position = -156
score = 5.40562
sequence = CTGAGTGTCACTCAA

Site:
position = -54
score = 5.23039
sequence = TTGAGCGAAACTCAG

Gene: Bcep1808_3495: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia glumae BGR1

Site:
position = -172
score = 5.58227
sequence = TTGAGTGTCACTCAA

Site:
position = -71
score = 5.01185
sequence = CTGAGCAAAACTCAG

Gene: bglu_2g11300: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia xenovorans LB400

Site:
position = -186
score = 5.36374
sequence = CTGAGTGATACTCAA

Gene: Bxe_B0960: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia phymatum STM815

Site:
position = -210
score = 5.58227
sequence = TTGAGTGACACTCAA

Gene: Bphy_3562: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
liuB
 
Burkholderia pseudomallei K96243

Gene: BPSS1447: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0803: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia sp. 383

Gene: Bcep18194_B0424: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia cepacia AMMD

Gene: Bamb_4587: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3494: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia glumae BGR1

Gene: bglu_2g11290: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia xenovorans LB400

Gene: Bxe_B0961: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia phymatum STM815

Gene: Bphy_3561: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
 
Burkholderia pseudomallei K96243

Gene: BPSS1446: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0804: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia sp. 383

Gene: Bcep18194_B0425: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia cepacia AMMD

Gene: Bamb_4586: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3493: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia glumae BGR1

Gene: bglu_2g11280: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia xenovorans LB400

Gene: Bxe_B0962: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia phymatum STM815

Gene: Bphy_3560: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
 
Burkholderia pseudomallei K96243

Gene: BPSS1445: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0805: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia sp. 383

Gene: Bcep18194_B0426: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia cepacia AMMD

Gene: Bamb_4585: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3492: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia glumae BGR1

Gene: bglu_2g11270: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia xenovorans LB400

Gene: Bxe_B0963: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia phymatum STM815

Gene: Bphy_3559: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
CRON 3.
atuB
 
Burkholderia pseudomallei K96243

Gene: BPSS2030: Short-chain dehydrogenase/reductase SDR
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
*
Burkholderia xenovorans LB400

Site:
position = -139
score = 5.18397
sequence = TTGAGTCTAGCTCAA

Site:
position = -53
score = 4.95288
sequence = ATGAGCTAAACTCAA

Gene: Bxe_A1394: Short-chain dehydrogenase/reductase SDR
 
Burkholderia phymatum STM815
Short-chain dehydrogenase/reductase SDR
acsA
 
Burkholderia pseudomallei K96243

Gene: BPSL1380: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
 
Burkholderia mallei ATCC 23344

Gene: BMA0802: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
 
Burkholderia sp. 383

Gene: Bcep18194_A4459: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
 
Burkholderia cepacia AMMD

Gene: Bamb_1201: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1

Gene: bglu_1g11900: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
 
Burkholderia xenovorans LB400

Gene: Bxe_A1395: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
 
Burkholderia phymatum STM815

Gene: Bphy_1850: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Bxe_A1396
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_A1396: Transcriptional regulator, AsnC family
 
Burkholderia phymatum STM815
Transcriptional regulator, AsnC family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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