Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FadP - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 46 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 12 5
Acidovorax sp. JS42 16 5
Comamonas testosteroni KF-1 12 3
Delftia acidovorans SPH-1 17 4
Polaromonas naphthalenivorans CJ2 13 4
Polaromonas sp. JS666 15 4
Rhodoferax ferrireducens DSM 15236 16 6
Variovorax paradoxus S110 19 4
Verminephrobacter eiseniae EF01-2 8 4
Methylibium petroleiphilum PM1 15 4
Leptothrix cholodnii SP-6 10 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
acdQ
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -66
score = 5.30615
sequence = AAGCACGACCGTGCTA

Gene: Aave_3439: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
*
Acidovorax sp. JS42

Site:
position = -43
score = 4.73833
sequence = AAGCACGCCCGTGCTA

Gene: Ajs_3393: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4861: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Delftia acidovorans SPH-1

Gene: Daci_5374: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3224: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Polaromonas sp. JS666

Gene: Bpro_3845: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -144
score = 5.52142
sequence = TCGCACGATCGTGCTA

Gene: Rfer_1646: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
*
Variovorax paradoxus S110

Site:
position = -87
score = 5.24981
sequence = CAGCACGACCGTGCTA

Gene: Vapar_1274: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -49
score = 5.31976
sequence = ACGAACGATCGTGCTA

Gene: Veis_2104: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1240: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdP
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3440: Acyl-CoA dehydrogenase family protein
 
Acidovorax sp. JS42

Gene: Ajs_3394: Acyl-CoA dehydrogenase family protein
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4860: Acyl-CoA dehydrogenase family protein
 
Delftia acidovorans SPH-1

Gene: Daci_5375: Acyl-CoA dehydrogenase family protein
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3225: Acyl-CoA dehydrogenase family protein
 
Polaromonas sp. JS666

Gene: Bpro_3846: Acyl-CoA dehydrogenase family protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1645: Acyl-CoA dehydrogenase family protein
 
Variovorax paradoxus S110

Gene: Vapar_1273: Acyl-CoA dehydrogenase family protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2105: Acyl-CoA dehydrogenase family protein
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1239: Acyl-CoA dehydrogenase family protein
Acyl-CoA dehydrogenase family protein
 
CRON 2.
etfD
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -121
score = 5.40184
sequence = AAGAACGATCGTTCGT

Gene: Aave_3139: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Acidovorax sp. JS42

Site:
position = -117
score = 4.8903
sequence = GTGAACGACCGTGCGA

Gene: Ajs_1950: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_1583: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Delftia acidovorans SPH-1

Site:
position = -60
score = 4.52172
sequence = CCGAACGAACGTTCGG

Gene: Daci_4310: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 2
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3283: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Gene: Pnap_2679: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 2
Polaromonas sp. JS666

Gene: Bpro_5295: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Gene: Bpro_1895: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*3
Rhodoferax ferrireducens DSM 15236

Site:
position = -85
score = 5.54809
sequence = AAGAACGATCGTTCTA

Gene: Rfer_3018: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Gene: Rfer_2269: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Gene: Rfer_4163: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Variovorax paradoxus S110

Gene: Vapar_3289: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -103
score = 5.00591
sequence = TGGAACGGTCGTTCGC

Gene: Veis_3981: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Methylibium petroleiphilum PM1

Site:
position = -87
score = 5.68119
sequence = TAGAACGACCGTTCGT

Gene: Mpe_A1443: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*3
Leptothrix cholodnii SP-6

Gene: Lcho_0158: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Gene: Lcho_1192: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Site:
position = -108
score = 5.07358
sequence = AAGCACGGTCGTGCTA

Gene: Lcho_2069: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
CRON 3.
fadB
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -41
score = 5.29754
sequence = AAGCACGACCGTTCTT

Gene: Aave_2880: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Acidovorax sp. JS42

Gene: Ajs_1684: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Comamonas testosteroni KF-1

Site:
position = -44
score = 5.20312
sequence = ACGCACGACCGTTCTT

Gene: CtesDRAFT_0956: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Delftia acidovorans SPH-1

Site:
position = -41
score = 5.51281
sequence = TCGCACGATCGTTCTT

Gene: Daci_3313: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Polaromonas naphthalenivorans CJ2

Site:
position = -106
score = 4.85455
sequence = AAGAACGGTCGTACTA

Gene: Pnap_1842: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Polaromonas sp. JS666

Site:
position = -86
score = 4.85455
sequence = AAGAACGGTCGTACTA

Gene: Bpro_2573: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -40
score = 5.65533
sequence = TCGCACGATCGTTCTA

Gene: Rfer_2386: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Variovorax paradoxus S110

Gene: Vapar_2925: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -40
score = 4.6353
sequence = ACGCACGCCCGTTCTT

Gene: Veis_1792: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Methylibium petroleiphilum PM1

Site:
position = -47
score = 5.74819
sequence = TCGAACGATCGTTCTA

Gene: Mpe_A1775: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Leptothrix cholodnii SP-6
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2879: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Acidovorax sp. JS42

Gene: Ajs_1685: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0957: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Delftia acidovorans SPH-1

Gene: Daci_3314: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1843: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Polaromonas sp. JS666

Gene: Bpro_2572: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2385: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Variovorax paradoxus S110

Gene: Vapar_2923: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1791: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1776: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Leptothrix cholodnii SP-6
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Aave_2878
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2878: Phenylacetic acid degradation protein paaI
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_2571: Phenylacetic acid degradation protein paaI
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0974: Phenylacetic acid degradation protein paaI
 
Variovorax paradoxus S110

Gene: Vapar_3624: Phenylacetic acid degradation protein paaI
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Phenylacetic acid degradation protein paaI
acdH3
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2877: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Acidovorax sp. JS42

Gene: Ajs_1687: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0958: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Delftia acidovorans SPH-1

Gene: Daci_3315: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_2570: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2384: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Variovorax paradoxus S110

Gene: Vapar_2922: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1790: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1777: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Leptothrix cholodnii SP-6
Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
CRON 4.
Rfer_3608
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -31
score = 5.27166
sequence = AAGAACGATCGTGCTT

Gene: Aave_0441: FIG026291: Hypothetical periplasmic protein
*
Acidovorax sp. JS42

Site:
position = -31
score = 5.31115
sequence = ACGAACGATCGTTCTT

Gene: Ajs_0365: FIG026291: Hypothetical periplasmic protein
*
Comamonas testosteroni KF-1

Site:
position = -69
score = 4.99492
sequence = ATGCACGACCGTTCGC

Gene: CtesDRAFT_3565: FIG026291: Hypothetical periplasmic protein
 
Delftia acidovorans SPH-1

Gene: Daci_0748: FIG026291: Hypothetical periplasmic protein
*
Polaromonas naphthalenivorans CJ2

Site:
position = -41
score = 5.53292
sequence = AAGAACGACCGTTCTA

Gene: Pnap_3655: FIG026291: Hypothetical periplasmic protein
*
Polaromonas sp. JS666

Site:
position = -56
score = 5.53292
sequence = AAGAACGACCGTTCTA

Gene: Bpro_4459: FIG026291: Hypothetical periplasmic protein
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -29
score = 5.50202
sequence = TAGCACGGTCGTTCTA

Gene: Rfer_3608: FIG026291: Hypothetical periplasmic protein
*
Variovorax paradoxus S110

Site:
position = -32
score = 5.53849
sequence = TCGAACGATCGTTCGC

Gene: Vapar_0572: FIG026291: Hypothetical periplasmic protein
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
FIG026291: Hypothetical periplasmic protein
 
CRON 5.
fadP
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4090: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Acidovorax sp. JS42

Site:
position = -29
score = 5.69636
sequence = TAGAACGATCGTTCGT

Gene: Ajs_0591: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Comamonas testosteroni KF-1

Site:
position = -31
score = 5.11898
sequence = TAGAACGAACGTTCGT

Gene: CtesDRAFT_3123: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Delftia acidovorans SPH-1

Site:
position = -33
score = 5.02612
sequence = TAGCACGAACGTTCGT

Gene: Daci_1336: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Polaromonas naphthalenivorans CJ2

Site:
position = -31
score = 5.68493
sequence = TAGAACGACCGTTCTT

Gene: Pnap_3478: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Polaromonas sp. JS666

Site:
position = -35
score = 5.69636
sequence = TAGAACGATCGTTCGT

Gene: Bpro_3958: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -26
score = 5.60723
sequence = TAGCACGATCGTTCTT

Gene: Rfer_3520: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Variovorax paradoxus S110

Site:
position = -36
score = 5.68119
sequence = TAGAACGACCGTTCGT

Gene: Vapar_0809: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Verminephrobacter eiseniae EF01-2

Site:
position = 31
score = 5.7001
sequence = TAGAACGATCGTTCTT

Gene: Veis_1225: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Methylibium petroleiphilum PM1

Site:
position = -34
score = 5.83888
sequence = TAGAACGATCGTTCGA

Gene: Mpe_A0420: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Leptothrix cholodnii SP-6

Site:
position = -30
score = 5.74601
sequence = TAGCACGATCGTTCGA

Gene: Lcho_4033: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
acdH
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4089: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Acidovorax sp. JS42

Gene: Ajs_0592: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3122: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Delftia acidovorans SPH-1

Gene: Daci_1337: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3477: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Polaromonas sp. JS666

Gene: Bpro_3957: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3519: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Variovorax paradoxus S110

Gene: Vapar_0810: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1224: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0419: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Leptothrix cholodnii SP-6

Gene: Lcho_4032: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Mpe_A0418
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4088: hypothetical protein
 
Acidovorax sp. JS42

Gene: Ajs_0593: hypothetical protein
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3121: hypothetical protein
 
Delftia acidovorans SPH-1

Gene: Daci_1338: hypothetical protein
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_0103: hypothetical protein
 2
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0322: hypothetical protein

Gene: Rfer_3518: hypothetical protein
 2
Variovorax paradoxus S110

Gene: Vapar_0811: hypothetical protein

Gene: Vapar_6081: hypothetical protein
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0418: hypothetical protein
 
Leptothrix cholodnii SP-6
hypothetical protein
acdB
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4087: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Acidovorax sp. JS42

Gene: Ajs_0594: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3120: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Delftia acidovorans SPH-1

Gene: Daci_1339: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3476: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Polaromonas sp. JS666

Gene: Bpro_3956: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3517: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Variovorax paradoxus S110

Gene: Vapar_0812: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0417: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Leptothrix cholodnii SP-6

Gene: Lcho_4031: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Vapar_0813
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0813: protein of unknown function DUF559
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
protein of unknown function DUF559
acdA
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4085: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Acidovorax sp. JS42

Gene: Ajs_0595: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3119: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Delftia acidovorans SPH-1

Gene: Daci_1340: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3474: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Polaromonas sp. JS666

Gene: Bpro_3953: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3516: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Variovorax paradoxus S110

Gene: Vapar_0814: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0416: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Leptothrix cholodnii SP-6

Gene: Lcho_4030: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Ajs_0596
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42

Gene: Ajs_0596: alpha/beta hydrolase-like
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3118: alpha/beta hydrolase-like
 
Delftia acidovorans SPH-1

Gene: Daci_1341: alpha/beta hydrolase-like
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0815: alpha/beta hydrolase-like
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
alpha/beta hydrolase-like
Daci_1342
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4084: TesB-like acyl-CoA thioesterase 2
 
Acidovorax sp. JS42

Gene: Ajs_0597: TesB-like acyl-CoA thioesterase 2
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3117: TesB-like acyl-CoA thioesterase 2
 
Delftia acidovorans SPH-1

Gene: Daci_1342: TesB-like acyl-CoA thioesterase 2
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3513: TesB-like acyl-CoA thioesterase 2
 
Variovorax paradoxus S110

Gene: Vapar_0816: TesB-like acyl-CoA thioesterase 2
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1900: TesB-like acyl-CoA thioesterase 2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
TesB-like acyl-CoA thioesterase 2
Vapar_0817
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0817: short-chain dehydrogenase/reductase SDR
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
short-chain dehydrogenase/reductase SDR
Vapar_0818
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0818: hypothetical protein
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
hypothetical protein
Vapar_0819
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0819: DSBA oxidoreductase
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
DSBA oxidoreductase
echH
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4083: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Acidovorax sp. JS42

Gene: Ajs_0598: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_3116: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Delftia acidovorans SPH-1

Gene: Daci_1343: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3473: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Polaromonas sp. JS666

Gene: Bpro_3932: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3512: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Variovorax paradoxus S110

Gene: Vapar_0820: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1899: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0414: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Leptothrix cholodnii SP-6

Gene: Lcho_4029: Enoyl-CoA hydratase (EC 4.2.1.17)
Enoyl-CoA hydratase (EC 4.2.1.17)
Mpe_A0415
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0415: hypothetical protein
 
Leptothrix cholodnii SP-6
hypothetical protein
Bpro_3955
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4086: hypothetical protein
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_3475: hypothetical protein
 
Polaromonas sp. JS666

Gene: Bpro_3955: hypothetical protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
hypothetical protein
Bpro_3954
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3954: DNA methylase, putative
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
DNA methylase, putative
 
CRON 6.
etfB
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -142
score = 5.31271
sequence = AAGCACGATCGTTCTT

Gene: Aave_2168: Electron transfer flavoprotein, beta subunit
*
Acidovorax sp. JS42

Site:
position = -122
score = 5.30897
sequence = AAGCACGATCGTTCGT

Gene: Ajs_2810: Electron transfer flavoprotein, beta subunit
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -138
score = 5.22797
sequence = TGGCACGATCGTTCTT

Gene: Daci_2390: Electron transfer flavoprotein, beta subunit
*
Polaromonas naphthalenivorans CJ2

Site:
position = -147
score = 5.68493
sequence = TAGAACGACCGTTCTT

Gene: Pnap_1223: Electron transfer flavoprotein, beta subunit
*
Polaromonas sp. JS666

Site:
position = -142
score = 5.68493
sequence = TAGAACGACCGTTCTT

Gene: Bpro_3143: Electron transfer flavoprotein, beta subunit
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -163
score = 4.99425
sequence = AAGCACGACCGTACTA

Gene: Rfer_1957: Electron transfer flavoprotein, beta subunit
*
Variovorax paradoxus S110

Site:
position = -131
score = 5.06498
sequence = AAGCACGGTCGTTCTT

Gene: Vapar_3374: Electron transfer flavoprotein, beta subunit
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2093: Electron transfer flavoprotein, beta subunit
*
Methylibium petroleiphilum PM1

Site:
position = -98
score = 5.1209
sequence = CCGAACGATCGTGCTT

Gene: Mpe_A1296: Electron transfer flavoprotein, beta subunit
*
Leptothrix cholodnii SP-6

Site:
position = -99
score = 5.31037
sequence = TAGTACGATCGTGCTT

Gene: Lcho_2540: Electron transfer flavoprotein, beta subunit
Electron transfer flavoprotein, beta subunit
etfA
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2169: Electron transfer flavoprotein, alpha subunit
 
Acidovorax sp. JS42

Gene: Ajs_2809: Electron transfer flavoprotein, alpha subunit
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_2391: Electron transfer flavoprotein, alpha subunit
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1224: Electron transfer flavoprotein, alpha subunit
 
Polaromonas sp. JS666

Gene: Bpro_3142: Electron transfer flavoprotein, alpha subunit
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1958: Electron transfer flavoprotein, alpha subunit
 
Variovorax paradoxus S110

Gene: Vapar_3373: Electron transfer flavoprotein, alpha subunit
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2092: Electron transfer flavoprotein, alpha subunit
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1297: Electron transfer flavoprotein, alpha subunit
 
Leptothrix cholodnii SP-6

Gene: Lcho_2539: Electron transfer flavoprotein, alpha subunit
Electron transfer flavoprotein, alpha subunit
Daci_2392
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_2392: Extracellular ligand-binding receptor
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Extracellular ligand-binding receptor
acdH2
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2170: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Acidovorax sp. JS42

Gene: Ajs_2808: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_1104: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Delftia acidovorans SPH-1

Gene: Daci_2393: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1225: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Polaromonas sp. JS666

Gene: Bpro_3141: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1959: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Variovorax paradoxus S110

Gene: Vapar_3372: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2091: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1298: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Leptothrix cholodnii SP-6

Gene: Lcho_2538: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Acyl-CoA dehydrogenase (EC 1.3.99.3)
BPSL0328
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2171: Dioxygenases related to 2-nitropropane dioxygenase
 
Acidovorax sp. JS42

Gene: Ajs_2807: Dioxygenases related to 2-nitropropane dioxygenase
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0550: Dioxygenases related to 2-nitropropane dioxygenase
 
Delftia acidovorans SPH-1

Gene: Daci_2394: Dioxygenases related to 2-nitropropane dioxygenase
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1226: Dioxygenases related to 2-nitropropane dioxygenase
 
Polaromonas sp. JS666

Gene: Bpro_3140: Dioxygenases related to 2-nitropropane dioxygenase
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1960: Dioxygenases related to 2-nitropropane dioxygenase
 
Variovorax paradoxus S110

Gene: Vapar_3371: Dioxygenases related to 2-nitropropane dioxygenase
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2090: Dioxygenases related to 2-nitropropane dioxygenase
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1299: Dioxygenases related to 2-nitropropane dioxygenase
 
Leptothrix cholodnii SP-6

Gene: Lcho_2537: Dioxygenases related to 2-nitropropane dioxygenase
Dioxygenases related to 2-nitropropane dioxygenase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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