Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Gly) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Gly-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 3 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 1
Pediococcus pentosaceus ATCC 25745 2 1
Lactobacillus sakei subsp. sakei 23K 2 1
Lactobacillus brevis ATCC 367 2 1
Lactobacillus casei ATCC 334 2 1
Lactobacillus plantarum WCFS1 2 1
Lactobacillus johnsonii NCC 533 2 1
Lactobacillus acidophilus NCFM 2 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 1
Lactobacillus salivarius subsp. salivarius UCC118 2 1
Lactobacillus fermentum IFO 3956 2 1
Lactobacillus helveticus DPC 4571 2 1
Lactobacillus reuteri JCM 1112 2 1
Lactobacillus rhamnosus GG 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glyQ
*
Oenococcus oeni PSU-1

Site:
position = -157
score = 31.46
sequence = TTATAAAGTGTCGCA...

Gene: OEOE_0992: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -322
score = 34.78
sequence = AATTTAATTGTTAAA...

Gene: LEUM_1194: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -228
score = 55.69
sequence = ATAGAGGACAGTGAA...

Gene: PEPE_1102: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -222
score = 52.71
sequence = AATAGACGTTGAAGA...

Gene: LSA0880: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus brevis ATCC 367

Site:
position = -245
score = 58.38
sequence = AGTCGATTATGATGA...

Gene: LVIS_0753: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus casei ATCC 334

Site:
position = -241
score = 50.94
sequence = TGAATCGGTGATGAG...

Gene: LSEI_1504: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus plantarum WCFS1

Site:
position = -283
score = 65.75
sequence = TAGTTAAGTGTTGAT...

Gene: lp_1965: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus johnsonii NCC 533

Site:
position = -209
score = 64.46
sequence = TTTGACAACTATAAA...

Gene: LJ1320: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus acidophilus NCFM

Site:
position = -210
score = 65.65
sequence = GTATTTGACAATAAT...

Gene: LBA1199: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -214
score = 54.69
sequence = TATATTGGTAATGAT...

Gene: LBUL_1167: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -259
score = 55.52
sequence = AAAGTAAACATTGAT...

Gene: LSL_0912: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus fermentum IFO 3956

Site:
position = -221
score = 44.82
sequence = CTGCAACGATGACGG...

Gene: LAF_0842: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus helveticus DPC 4571

Site:
position = -213
score = 51.35
sequence = GTATTTGACAATGAT...

Gene: lhv_1299: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus reuteri JCM 1112

Site:
position = -216
score = 50.07
sequence = TATTGGCAATGACAG...

Gene: LAR_0711: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
*
Lactobacillus rhamnosus GG

Site:
position = -255
score = 53.74
sequence = TGAATCGGTGATGAG...

Gene: LGG_01514: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
OEOE_0993
 
Oenococcus oeni PSU-1

Gene: OEOE_0993: hypothetical protein
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
hypothetical protein
glyS
 
Oenococcus oeni PSU-1

Gene: OEOE_0994: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1193: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1101: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0881: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0754: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1503: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus plantarum WCFS1

Gene: lp_1964: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1319: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus acidophilus NCFM

Gene: LBA1198: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1166: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0911: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0843: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1298: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0712: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
 
Lactobacillus rhamnosus GG

Gene: LGG_01513: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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