Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Asp) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Asp-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 1
Pediococcus pentosaceus ATCC 25745 2 1
Lactobacillus sakei subsp. sakei 23K 2 1
Lactobacillus brevis ATCC 367 2 1
Lactobacillus casei ATCC 334 2 1
Lactobacillus plantarum WCFS1 2 1
Lactobacillus johnsonii NCC 533 6 2
Lactobacillus acidophilus NCFM 2 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 1
Lactobacillus salivarius subsp. salivarius UCC118 2 1
Lactobacillus fermentum IFO 3956 2 1
Lactobacillus helveticus DPC 4571 2 1
Lactobacillus reuteri JCM 1112 2 2
Lactobacillus rhamnosus GG 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hisS
 
Oenococcus oeni PSU-1

Gene: OEOE_0589: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -363
score = 74.3
sequence = ATTAGAACCGATGAA...

Gene: LEUM_1310: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -223
score = 84.85
sequence = ATATAAATCGATGAA...

Gene: PEPE_1116: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -227
score = 52.21
sequence = GATGACCAGTGATAA...

Gene: LSA0863: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus brevis ATCC 367

Site:
position = -238
score = 63.9
sequence = GATTGCCAAAGAGAA...

Gene: LVIS_0735: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus casei ATCC 334

Site:
position = -361
score = 50.9
sequence = ACTAAGACCTGTGAC...

Gene: LSEI_1527: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus plantarum WCFS1

Site:
position = -238
score = 47.99
sequence = CAATCGACCGCAGAG...

Gene: lp_1981: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus johnsonii NCC 533

Site:
position = -222
score = 40.28
sequence = GGAATTATCGATGAC...

Gene: LJ1392: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus acidophilus NCFM

Site:
position = -236
score = 37.8
sequence = AATTATCGATGACGA...

Gene: LBA0935: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -230
score = 37.78
sequence = AATTATCAATGACAA...

Gene: LBUL_0812: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -243
score = 76.3
sequence = TAAAGCCGAATGAAA...

Gene: LSL_0852: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus fermentum IFO 3956

Site:
position = -221
score = 51.95
sequence = GACTGTCAATGAAAA...

Gene: LAF_0832: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus helveticus DPC 4571

Site:
position = -236
score = 37.42
sequence = AATTATCGATGACAA...

Gene: lhv_1013: Histidyl-tRNA synthetase (EC 6.1.1.21)
*2
Lactobacillus reuteri JCM 1112

Site:
position = -281
score = 67.78
sequence = TATAAAAGCATTGAC...

Gene: LAR_1731: Histidyl-tRNA synthetase (EC 6.1.1.21)

Gene: LAR_1715: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Lactobacillus rhamnosus GG

Site:
position = -438
score = 47.09
sequence = ACTAAGACCTGTGAC...

Gene: LGG_01562: Histidyl-tRNA synthetase (EC 6.1.1.21)
Histidyl-tRNA synthetase (EC 6.1.1.21)
aspS
 
Oenococcus oeni PSU-1

Gene: OEOE_0590: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1309: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1115: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0864: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0736: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1526: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus plantarum WCFS1

Gene: lp_1980: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1391: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus acidophilus NCFM

Gene: LBA0936: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0813: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0853: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0833: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1014: Aspartyl-tRNA synthetase (EC 6.1.1.12)
*
Lactobacillus reuteri JCM 1112

Site:
position = -233
score = 50.56
sequence = AATAGCTGTTGATAA...

Gene: LAR_0695: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Lactobacillus rhamnosus GG

Gene: LGG_01561: Aspartyl-tRNA synthetase (EC 6.1.1.12)
Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
CRON 2.
glnQ
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
*
Lactobacillus johnsonii NCC 533

Site:
position = -386
score = 84.74
sequence = AAAAAGCGATAAAAA...

Gene: LJ0753: ABC-type polar amino acid transport system, ATPase component
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
ABC-type polar amino acid transport system, ATPase component
glnH
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
 
Lactobacillus johnsonii NCC 533

Gene: LJ0754: glutamine ABC transporter solute-binding component
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
glutamine ABC transporter solute-binding component
glnM
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
 
Lactobacillus johnsonii NCC 533

Gene: LJ0755: glutamine ABC transporter permease component
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
ABC-type amino acid transport system, permease component
glnP
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
 
Lactobacillus johnsonii NCC 533

Gene: LJ0756: glutamine ABC transporter permease component
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
ABC-type amino acid transport system, permease component
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD