Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ala) - Streptococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ala-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Streptococcus pneumoniae TIGR4 2 1
Streptococcus equi subsp. zooepidemicus MGCS10565 1 1
Streptococcus gordonii str. Challis substr. CH1 2 1
Streptococcus thermophilus CNRZ1066 1 1
Streptococcus mutans UA159 2 1
Streptococcus pyogenes M1 GAS 1 1
Streptococcus sanguinis SK36 2 1
Streptococcus agalactiae 2603V/R 2 1
Streptococcus uberis 0140J 1 1
Lactococcus lactis subsp. cremoris SK11 1 1
Lactococcus lactis subsp. lactis Il1403 1 1
Streptococcus suis 05ZYH33 2 1
Streptococcus dysgalactiae subsp. equisimilis GGS_124 2 1
Streptococcus gallolyticus UCN34 1 1
Streptococcus mitis B6 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG4894
*
Streptococcus pneumoniae TIGR4

Site:
position = -188
score = 54.7
sequence = TAAGAAAGTTGAGAA...

Gene: SP_1384: hypothetical protein
 
Streptococcus equi subsp. zooepidemicus MGCS10565
*
Streptococcus gordonii str. Challis substr. CH1

Site:
position = -200
score = 53.63
sequence = ATGAAATGGTGAGAA...

Gene: SGO_1571: hypothetical protein
 
Streptococcus thermophilus CNRZ1066
*
Streptococcus mutans UA159

Site:
position = -199
score = 52.13
sequence = TAATTATCCTGTCAA...

Gene: SMU.649: hypothetical protein
 
Streptococcus pyogenes M1 GAS
*
Streptococcus sanguinis SK36

Site:
position = -204
score = 51.87
sequence = AGACTGGTGAGAATT...

Gene: SSA_0755: hypothetical protein
*
Streptococcus agalactiae 2603V/R

Site:
position = -210
score = 45.55
sequence = ATACTATTGAGAATG...

Gene: SAG0809: hypothetical protein
 
Streptococcus uberis 0140J
 
Lactococcus lactis subsp. cremoris SK11
 
Lactococcus lactis subsp. lactis Il1403
*
Streptococcus suis 05ZYH33

Site:
position = -245
score = 49.94
sequence = TTTACTTATTAAGAA...

Gene: SSU05_1237: hypothetical protein
*
Streptococcus dysgalactiae subsp. equisimilis GGS_124

Site:
position = -216
score = 49.83
sequence = TAATTTAGTTAAGAA...

Gene: SDEG_1431: hypothetical protein
 
Streptococcus gallolyticus UCN34
*
Streptococcus mitis B6

Site:
position = -198
score = 57.37
sequence = AGAAAGTTGAGAATT...

Gene: smi_0748: hypothetical protein
hypothetical protein
alaS
 
Streptococcus pneumoniae TIGR4

Gene: SP_1383: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Streptococcus equi subsp. zooepidemicus MGCS10565

Site:
position = -318
score = 43.03
sequence = GTTTAGTTAAGAATT...

Gene: Sez_0667: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Streptococcus gordonii str. Challis substr. CH1

Gene: SGO_1570: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Streptococcus thermophilus CNRZ1066

Site:
position = -237
score = 48.14
sequence = TTCCCTTTGAGAAAG...

Gene: str0457: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Streptococcus mutans UA159

Gene: SMU.650: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Streptococcus pyogenes M1 GAS

Site:
position = -347
score = 52.55
sequence = TAATTTAGTTAAGAA...

Gene: SPy1389: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Streptococcus sanguinis SK36

Gene: SSA_0756: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Streptococcus agalactiae 2603V/R

Gene: SAG0810: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Streptococcus uberis 0140J

Site:
position = -253
score = 41.86
sequence = TAAGTTAGTTAAGAA...

Gene: SUB1230: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactococcus lactis subsp. cremoris SK11

Site:
position = -208
score = 31.29
sequence = GATAAAAGTGCTTAT...

Gene: LACR_1887: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactococcus lactis subsp. lactis Il1403

Site:
position = -208
score = 28.56
sequence = AAAAAAAGTGCTTAT...

Gene: L0343: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Streptococcus suis 05ZYH33

Gene: SSU05_1236: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Streptococcus dysgalactiae subsp. equisimilis GGS_124

Gene: SDEG_1430: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Streptococcus gallolyticus UCN34

Site:
position = -339
score = 50.5
sequence = CAATTAAAAGGATTG...

Gene: GALLO_0674: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Streptococcus mitis B6

Gene: smi_0749: Alanyl-tRNA synthetase (EC 6.1.1.7)
Alanyl-tRNA synthetase (EC 6.1.1.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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