Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ykoK - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: ykoK
RFAM: RF00380
Regulation mode:
Biological process: Magnesium homeostasis
Effector: Magnesium ion, (Mg2+)
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Pediococcus pentosaceus ATCC 25745
Lactobacillus sakei subsp. sakei 23K 1 1
Lactobacillus brevis ATCC 367 4 1
Lactobacillus casei ATCC 334
Lactobacillus plantarum WCFS1 3 1
Lactobacillus johnsonii NCC 533 2 2
Lactobacillus acidophilus NCFM 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571 2 2
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0474
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -390
score = 133.23
sequence = ATCGCTTTTCCGTTA...

Gene: LSA1086: Na+/K+ ATPase alpha subunit
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -376
score = 126.09
sequence = GTGCTTTCCGTTAGG...

Gene: LGG_01319: Na+/K+ ATPase alpha subunit
Na+/K+ ATPase alpha subunit
 
CRON 2.
lp_2077
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
*2
Lactobacillus brevis ATCC 367

Site:
position = -376
score = 132.28
sequence = AATAAATTGCAATTA...

Gene: LVIS_2157: ABC-type anion transport system, duplicated permease component

Gene: LVIS_2156: ABC-type anion transport system, duplicated permease component
 
Lactobacillus casei ATCC 334
*
Lactobacillus plantarum WCFS1

Site:
position = -265
score = 125.51
sequence = AATCAGTTGCAATTA...

Gene: lp_2077: ABC-type anion transport system, duplicated permease component
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
ABC-type anion transport system, duplicated permease component
lp_2076
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2155: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1

Gene: lp_2076: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
lp_2075
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2154: Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1

Gene: lp_2075: Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)
 
CRON 3.
mgtB
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
*2
Lactobacillus johnsonii NCC 533

Site:
position = -241
score = 127.34
sequence = AAATAAACTGTTAGG...

Gene: LJ0201: Mg(2+) transport ATPase, P-type 2

Site:
position = -183
score = 134.09
sequence = AAATAAACTGTTAGG...

Gene: LJ1155: Mg(2+) transport ATPase, P-type 2
*
Lactobacillus acidophilus NCFM

Site:
position = -245
score = 123.8
sequence = ATAAAAACTGTTAGG...

Gene: LBA0212: Mg(2+) transport ATPase, P-type 2
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -252
score = 128.69
sequence = AAATGAACTGTTAGG...

Gene: LBUL_0296: Mg(2+) transport ATPase, P-type 2
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
*2
Lactobacillus helveticus DPC 4571

Site:
position = -247
score = 123.27
sequence = AGTAAAACTGTTAGG...

Gene: lhv_0228: Mg(2+) transport ATPase, P-type 2

Site:
position = -207
score = 125.57
sequence = AAATGAACTGTTAGG...

Gene: lhv_0360: Mg(2+) transport ATPase, P-type 2
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
Mg(2+) transport ATPase, P-type 2
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD