Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L21_leader - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 2 1
Lactobacillus reuteri JCM 1112 3 1
Lactobacillus helveticus DPC 4571 2 1
Lactobacillus fermentum IFO 3956 3 1
Lactobacillus salivarius subsp. salivarius UCC118 3 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 1
Lactobacillus acidophilus NCFM 2 1
Lactobacillus johnsonii NCC 533 2 1
Lactobacillus plantarum WCFS1 3 1
Lactobacillus casei ATCC 334 3 1
Lactobacillus brevis ATCC 367 3 1
Lactobacillus sakei subsp. sakei 23K 3 1
Pediococcus pentosaceus ATCC 25745 3 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 1
Lactobacillus rhamnosus GG 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplU
*
Oenococcus oeni PSU-1

Site:
position = -75
score = 38.82
sequence = CAATGCTTCAACCAC...

Gene: OEOE_0957: LSU ribosomal protein L21p
*
Lactobacillus reuteri JCM 1112

Site:
position = -89
score = 50.62
sequence = CCAACAACTACAACC...

Gene: LAR_1124: LSU ribosomal protein L21p
*
Lactobacillus helveticus DPC 4571

Site:
position = -96
score = 57.44
sequence = TCCACATCTGCAACC...

Gene: lhv_1424: LSU ribosomal protein L21p
*
Lactobacillus fermentum IFO 3956

Site:
position = -83
score = 50.39
sequence = CCCACAACTACAACC...

Gene: LAF_1269: LSU ribosomal protein L21p
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -95
score = 59.04
sequence = ATCACATCTGCAACC...

Gene: LSL_0956: LSU ribosomal protein L21p
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -94
score = 62.24
sequence = CTCGATTCTGCAACC...

Gene: LBUL_1326: LSU ribosomal protein L21p
*
Lactobacillus acidophilus NCFM

Site:
position = -95
score = 61.15
sequence = TCCACATCTGCAACC...

Gene: LBA1338: LSU ribosomal protein L21p
*
Lactobacillus johnsonii NCC 533

Site:
position = -96
score = 60.19
sequence = CTCACATCTGCAACC...

Gene: LJ1556: LSU ribosomal protein L21p
*
Lactobacillus plantarum WCFS1

Site:
position = -95
score = 53.9
sequence = TACAGCTACAACCGC...

Gene: lp_1592: LSU ribosomal protein L21p
*
Lactobacillus casei ATCC 334

Site:
position = -101
score = 45.19
sequence = CCCTCCTATGCAACC...

Gene: LSEI_1646: LSU ribosomal protein L21p
*
Lactobacillus brevis ATCC 367

Site:
position = -99
score = 61.41
sequence = TCCACAGCTGCAACC...

Gene: LVIS_0985: LSU ribosomal protein L21p
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -88
score = 62.63
sequence = CACAGCTGCAACCGC...

Gene: LSA0670: LSU ribosomal protein L21p
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -79
score = 57.93
sequence = CCACGCTACAACCGC...

Gene: PEPE_0811: LSU ribosomal protein L21p
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -96
score = 46.27
sequence = AGCATAGCTACAACC...

Gene: LEUM_1326: LSU ribosomal protein L21p
*
Lactobacillus rhamnosus GG

Site:
position = -100
score = 42.6
sequence = CCCTCCTATGCAACC...

Gene: LGG_01690: LSU ribosomal protein L21p
LSU ribosomal protein L21p
ysxB
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1123: FIG139598: Potential ribosomal protein
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1268: FIG139598: Potential ribosomal protein
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0955: FIG139598: Potential ribosomal protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_1593: FIG139598: Potential ribosomal protein
 
Lactobacillus casei ATCC 334

Gene: LSEI_1645: FIG139598: Potential ribosomal protein
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0984: FIG139598: Potential ribosomal protein
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0671: FIG139598: Potential ribosomal protein
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0812: FIG139598: Potential ribosomal protein
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01689: FIG139598: Potential ribosomal protein
FIG139598: Potential ribosomal protein
rpmA
 
Oenococcus oeni PSU-1

Gene: OEOE_0958: LSU ribosomal protein L27p
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1122: LSU ribosomal protein L27p
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1423: LSU ribosomal protein L27p
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1267: LSU ribosomal protein L27p
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0954: LSU ribosomal protein L27p
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1325: LSU ribosomal protein L27p
 
Lactobacillus acidophilus NCFM

Gene: LBA1337: LSU ribosomal protein L27p
 
Lactobacillus johnsonii NCC 533

Gene: LJ1555: LSU ribosomal protein L27p
 
Lactobacillus plantarum WCFS1

Gene: lp_1594: LSU ribosomal protein L27p
 
Lactobacillus casei ATCC 334

Gene: LSEI_1644: LSU ribosomal protein L27p
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0983: LSU ribosomal protein L27p
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0672: LSU ribosomal protein L27p
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0813: LSU ribosomal protein L27p
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1325: LSU ribosomal protein L27p
 
Lactobacillus rhamnosus GG

Gene: LGG_01688: LSU ribosomal protein L27p
LSU ribosomal protein L27p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD