Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L20_leader - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: L20_leader
RFAM: RF00558
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 3 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 3 1
Pediococcus pentosaceus ATCC 25745 3 1
Lactobacillus sakei subsp. sakei 23K 3 1
Lactobacillus brevis ATCC 367 3 1
Lactobacillus casei ATCC 334 3 1
Lactobacillus plantarum WCFS1 3 1
Lactobacillus johnsonii NCC 533 3 1
Lactobacillus acidophilus NCFM 3 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 3 1
Lactobacillus salivarius subsp. salivarius UCC118 3 1
Lactobacillus fermentum IFO 3956 3 1
Lactobacillus helveticus DPC 4571 3 1
Lactobacillus reuteri JCM 1112 3 1
Lactobacillus rhamnosus GG 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
infC
*
Oenococcus oeni PSU-1

Site:
position = -85
score = 29.48
sequence = TTGAATTAAGTAGAG...

Gene: OEOE_1280: Translation initiation factor 3
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -246
score = 57.74
sequence = GTTGAACAAGTAGAA...

Gene: LEUM_1443: Translation initiation factor 3
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -168
score = 70.66
sequence = AGAAAAAGCAGAAGC...

Gene: PEPE_0699: Translation initiation factor 3
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -189
score = 57.65
sequence = AGAAATAAAGCAGAA...

Gene: LSA1398: Translation initiation factor 3
*
Lactobacillus brevis ATCC 367

Site:
position = -235
score = 50.77
sequence = AGAAATTAAGCAGAG...

Gene: LVIS_1035: Translation initiation factor 3
*
Lactobacillus casei ATCC 334

Site:
position = -192
score = 52.5
sequence = TGAGAAAAAGCAGAA...

Gene: LSEI_1699: Translation initiation factor 3
*
Lactobacillus plantarum WCFS1

Site:
position = -146
score = 88.76
sequence = AAAAAAAGCAGAAGC...

Gene: lp_1515: Translation initiation factor 3
*
Lactobacillus johnsonii NCC 533

Site:
position = -152
score = 66.88
sequence = TGAGAACAAGAAGAA...

Gene: LJ1641: Translation initiation factor 3
*
Lactobacillus acidophilus NCFM

Site:
position = -220
score = 74.71
sequence = TGAGAACAAGAAGAA...

Gene: LBA1538: Translation initiation factor 3
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -160
score = 67.22
sequence = TGAGAACAAGAAGAA...

Gene: LBUL_1398: Translation initiation factor 3
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -154
score = 56.12
sequence = AGAAAAAGCAGAGGC...

Gene: LSL_0495: Translation initiation factor 3
*
Lactobacillus fermentum IFO 3956

Site:
position = -181
score = 60.36
sequence = AAAGAAAAAGTAGAA...

Gene: LAF_1311: Translation initiation factor 3
*
Lactobacillus helveticus DPC 4571

Site:
position = -315
score = 61.4
sequence = TGAGAACAAGAAGAA...

Gene: lhv_1598: Translation initiation factor 3
*
Lactobacillus reuteri JCM 1112

Site:
position = -180
score = 57.75
sequence = AAAGAAAAAGCAGAA...

Gene: LAR_1175: Translation initiation factor 3
*
Lactobacillus rhamnosus GG

Site:
position = -192
score = 52.17
sequence = TGAGAAAAAGCAGAA...

Gene: LGG_01747: Translation initiation factor 3
Translation initiation factor 3
rpmI
 
Oenococcus oeni PSU-1

Gene: OEOE_1279: LSU ribosomal protein L35p
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1442: LSU ribosomal protein L35p
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0700: LSU ribosomal protein L35p
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1397: LSU ribosomal protein L35p
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1034: LSU ribosomal protein L35p
 
Lactobacillus casei ATCC 334

Gene: LSEI_1698: LSU ribosomal protein L35p
 
Lactobacillus plantarum WCFS1

Gene: lp_1516: LSU ribosomal protein L35p
 
Lactobacillus johnsonii NCC 533

Gene: LJ1640b: LSU ribosomal protein L35p
 
Lactobacillus acidophilus NCFM

Gene: LBA1537: LSU ribosomal protein L35p
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1397: LSU ribosomal protein L35p
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0496: LSU ribosomal protein L35p
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1310: LSU ribosomal protein L35p
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1597: LSU ribosomal protein L35p
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1174: LSU ribosomal protein L35p
 
Lactobacillus rhamnosus GG

Gene: LGG_01746: LSU ribosomal protein L35p
LSU ribosomal protein L35p
rplT
 
Oenococcus oeni PSU-1

Gene: OEOE_1278: LSU ribosomal protein L20p
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1441: LSU ribosomal protein L20p
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0701: LSU ribosomal protein L20p
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1396: LSU ribosomal protein L20p
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1033: LSU ribosomal protein L20p
 
Lactobacillus casei ATCC 334

Gene: LSEI_1697: LSU ribosomal protein L20p
 
Lactobacillus plantarum WCFS1

Gene: lp_1517: LSU ribosomal protein L20p
 
Lactobacillus johnsonii NCC 533

Gene: LJ1640: LSU ribosomal protein L20p
 
Lactobacillus acidophilus NCFM

Gene: LBA1536: LSU ribosomal protein L20p
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1396: LSU ribosomal protein L20p
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0497: LSU ribosomal protein L20p
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1309: LSU ribosomal protein L20p
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1596: LSU ribosomal protein L20p
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1173: LSU ribosomal protein L20p
 
Lactobacillus rhamnosus GG

Gene: LGG_01745: LSU ribosomal protein L20p
LSU ribosomal protein L20p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD