Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L19_leader - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: L19_leader
RFAM: RF00556
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Lactobacillus brevis ATCC 367 1 1
Lactobacillus casei ATCC 334 1 1
Lactobacillus plantarum WCFS1 1 1
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus acidophilus NCFM 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplS
 
Oenococcus oeni PSU-1

Gene: OEOE_0802: LSU ribosomal protein L19p
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -63
score = 25.53
sequence = CGATAATCCGCTGTG...

Gene: LEUM_0607: LSU ribosomal protein L19p
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -57
score = 20.47
sequence = CAATGTTCCGCTGGC...

Gene: PEPE_0850: LSU ribosomal protein L19p
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -56
score = 32.26
sequence = CGATATTCCGCTGGC...

Gene: LSA0719: LSU ribosomal protein L19p
*
Lactobacillus brevis ATCC 367

Site:
position = -58
score = 25.4
sequence = AACAACATTCCGCTG...

Gene: LVIS_0939: LSU ribosomal protein L19p
*
Lactobacillus casei ATCC 334

Site:
position = -54
score = 32.32
sequence = AACGACATTCCGCTG...

Gene: LSEI_1597: LSU ribosomal protein L19p
*
Lactobacillus plantarum WCFS1

Site:
position = -54
score = 35.3
sequence = CGATGTTCCGCTGAC...

Gene: lp_1640: LSU ribosomal protein L19p
*
Lactobacillus johnsonii NCC 533

Site:
position = -55
score = 24.39
sequence = ATGGGTATTCCGCTG...

Gene: LJ1512: LSU ribosomal protein L19p
*
Lactobacillus acidophilus NCFM

Site:
position = -59
score = 31.49
sequence = ATGGGTATTCCGCTG...

Gene: LBA1286: LSU ribosomal protein L19p
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -56
score = 23.0
sequence = ATGGGTGTTCCGCTG...

Gene: LBUL_1273: LSU ribosomal protein L19p
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -50
score = 30.19
sequence = CGATATTCCGCTGCA...

Gene: LSL_0636: LSU ribosomal protein L19p
*
Lactobacillus fermentum IFO 3956

Site:
position = -59
score = 25.89
sequence = AACGGTATTCCGCTG...

Gene: LAF_1219: LSU ribosomal protein L19p
*
Lactobacillus helveticus DPC 4571

Site:
position = -59
score = 18.71
sequence = ATGGGTGTTCCGCTG...

Gene: lhv_1368: LSU ribosomal protein L19p
*
Lactobacillus reuteri JCM 1112

Site:
position = -61
score = 30.39
sequence = AACGGTATTCCGCTG...

Gene: LAR_1082: LSU ribosomal protein L19p
*
Lactobacillus rhamnosus GG

Site:
position = -54
score = 29.11
sequence = AACGGCATTCCGCTG...

Gene: LGG_01639: LSU ribosomal protein L19p
LSU ribosomal protein L19p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD