Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L13_leader - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: L13_leader
RFAM: RF00555
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 1
Pediococcus pentosaceus ATCC 25745 2 1
Lactobacillus sakei subsp. sakei 23K 2 1
Lactobacillus brevis ATCC 367 2 1
Lactobacillus casei ATCC 334 2 1
Lactobacillus plantarum WCFS1 2 1
Lactobacillus johnsonii NCC 533 2 1
Lactobacillus acidophilus NCFM 2 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 1
Lactobacillus salivarius subsp. salivarius UCC118 2 1
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571 2 1
Lactobacillus reuteri JCM 1112 2 1
Lactobacillus rhamnosus GG 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplM
 
Oenococcus oeni PSU-1
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -95
score = 55.2
sequence = GTATTGTTTACCTCA...

Gene: LEUM_0230: LSU ribosomal protein L13p (L13Ae)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -82
score = 47.74
sequence = TGGTATTGTTTACCT...

Gene: PEPE_1386: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -77
score = 61.38
sequence = TGGTATTGTTTGCCC...

Gene: LSA1722: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus brevis ATCC 367

Site:
position = -78
score = 40.2
sequence = TGGTATTGTTTGCCC...

Gene: LVIS_1658: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus casei ATCC 334

Site:
position = -77
score = 59.59
sequence = TGGTATTGTTTGCCC...

Gene: LSEI_2463: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus plantarum WCFS1

Site:
position = -75
score = 58.14
sequence = GTATTGTTTGCCCCA...

Gene: lp_1077: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus johnsonii NCC 533

Site:
position = -70
score = 45.75
sequence = GTATGTTTGTCCACG...

Gene: LJ0367: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus acidophilus NCFM

Site:
position = -69
score = 46.64
sequence = GTATGTTTGTCCACG...

Gene: LBA0323: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -121
score = 43.62
sequence = GTATGTTTGTCCACG...

Gene: LBUL_0382: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -79
score = 46.85
sequence = TGGTATTGTTTGCCC...

Gene: LSL_1403: LSU ribosomal protein L13p (L13Ae)
 
Lactobacillus fermentum IFO 3956
*
Lactobacillus helveticus DPC 4571

Site:
position = -69
score = 46.64
sequence = GTATGTTTGTCCACG...

Gene: lhv_0343: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus reuteri JCM 1112

Site:
position = -74
score = 19.94
sequence = TGGTATTTCTTTTCC...

Gene: LAR_1362: LSU ribosomal protein L13p (L13Ae)
*
Lactobacillus rhamnosus GG

Site:
position = -77
score = 59.59
sequence = TGGTATTGTTTGCCC...

Gene: LGG_02448: LSU ribosomal protein L13p (L13Ae)
LSU ribosomal protein L13p (L13Ae)
rpsI
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0231: SSU ribosomal protein S9p (S16e)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1385: SSU ribosomal protein S9p (S16e)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1721: SSU ribosomal protein S9p (S16e)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1657: SSU ribosomal protein S9p (S16e)
 
Lactobacillus casei ATCC 334

Gene: LSEI_2462: SSU ribosomal protein S9p (S16e)
 
Lactobacillus plantarum WCFS1

Gene: lp_1078: SSU ribosomal protein S9p (S16e)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0368: SSU ribosomal protein S9p (S16e)
 
Lactobacillus acidophilus NCFM

Gene: LBA0324: SSU ribosomal protein S9p (S16e)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0383: SSU ribosomal protein S9p (S16e)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1402: SSU ribosomal protein S9p (S16e)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0344: SSU ribosomal protein S9p (S16e)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1361: SSU ribosomal protein S9p (S16e)
 
Lactobacillus rhamnosus GG

Gene: LGG_02447: SSU ribosomal protein S9p (S16e)
SSU ribosomal protein S9p (S16e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD