Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 5 2
Pediococcus pentosaceus ATCC 25745 5 2
Lactobacillus sakei subsp. sakei 23K 1 1
Lactobacillus brevis ATCC 367 5 2
Lactobacillus casei ATCC 334 1 1
Lactobacillus plantarum WCFS1 1 1
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus acidophilus NCFM 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus fermentum IFO 3956 5 2
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus reuteri JCM 1112 4 1
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribD
 
Oenococcus oeni PSU-1
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -259
score = 115.12
sequence = TTAATCTTCGGGGCA...

Gene: LEUM_0822: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -249
score = 115.39
sequence = TAGATTTCTTCGGGG...

Gene: PEPE_1820: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Lactobacillus sakei subsp. sakei 23K
*
Lactobacillus brevis ATCC 367

Site:
position = -264
score = 118.45
sequence = ATGATTTCTTCGGGG...

Gene: LVIS_1653: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Lactobacillus fermentum IFO 3956

Site:
position = -297
score = 113.49
sequence = ATAATTTCTTCGGGG...

Gene: LAF_0776: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus reuteri JCM 1112

Site:
position = -287
score = 127.35
sequence = ATTTTCTTCGGGGCA...

Gene: LAR_0824: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Lactobacillus rhamnosus GG
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0823: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1819: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1652: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0775: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0825: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Lactobacillus rhamnosus GG
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0824: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1818: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1651: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1

Gene: lp_1437: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 2
Lactobacillus fermentum IFO 3956

Gene: LAF_0774: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)

Gene: LAF_1772: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0826: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Lactobacillus rhamnosus GG
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0825: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1817: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1650: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1

Gene: lp_1438: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0773: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0827: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Lactobacillus rhamnosus GG
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 2.
ribU
*
Oenococcus oeni PSU-1

Site:
position = -363
score = 117.0
sequence = AAATTCTTCGGGGCA...

Gene: OEOE_1680: Substrate-specific component RibU of riboflavin ECF transporter
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -236
score = 98.02
sequence = ATAATAACTTCAGGG...

Gene: LEUM_1295: Substrate-specific component RibU of riboflavin ECF transporter
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -244
score = 94.3
sequence = GGTTCATCTTCAAGG...

Gene: PEPE_1593: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -260
score = 101.54
sequence = GGTTCGTCTTCAGGG...

Gene: LSA1023: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus brevis ATCC 367

Site:
position = -233
score = 110.03
sequence = TTCATCTTCAGGGCA...

Gene: LVIS_0772: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus casei ATCC 334

Site:
position = -214
score = 108.43
sequence = TTCGTCTTCAGGGCA...

Gene: LSEI_1373: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus plantarum WCFS1

Site:
position = -246
score = 99.09
sequence = GGTTCATCTTCAGGG...

Gene: lp_1887: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus johnsonii NCC 533

Site:
position = -193
score = 91.8
sequence = GTTGTCTTCAGGGCA...

Gene: LJ1088: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus acidophilus NCFM

Site:
position = -192
score = 86.69
sequence = GTTGTCTTCAGGGCA...

Gene: LBA0965: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -195
score = 84.7
sequence = GTTGTCTTCGGGGCA...

Gene: LBUL_0772: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -238
score = 98.38
sequence = TAGGTGTCTTCAGAG...

Gene: LSL_0937: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus fermentum IFO 3956

Site:
position = -215
score = 91.72
sequence = TTTGTCTTCAAGGCA...

Gene: LAF_0875: Substrate-specific component RibU of riboflavin ECF transporter
*
Lactobacillus helveticus DPC 4571

Site:
position = -193
score = 87.1
sequence = GTTGTCTTCAAGGCA...

Gene: lhv_1057: Substrate-specific component RibU of riboflavin ECF transporter
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -219
score = 110.87
sequence = TTCGTCTTCAGGGCA...

Gene: LGG_01383: Substrate-specific component RibU of riboflavin ECF transporter
Substrate-specific component RibU of riboflavin ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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