Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Chloroflexia

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Chloroflexi
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485 12 9
Chloroflexus sp. Y-400-fl 11 9
Roseiflexus castenholzii DSM 13941 12 10
Roseiflexus sp. RS-1 13 10
Herpetosiphon aurantiacus ATCC 23779 13 10
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ftsK
*
Chloroflexus aggregans DSM 9485

Site:
position = -152
score = 4.55972
sequence = TCGCACAAATATGCTA

Gene: Cagg_2352: Cell division protein FtsK
*
Chloroflexus sp. Y-400-fl

Site:
position = -67
score = 4.55972
sequence = TCGCACAAATATGCTA

Gene: Chy400_1345: Cell division protein FtsK
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_1193: Cell division protein FtsK
 
Roseiflexus sp. RS-1

Gene: RoseRS_0820: Cell division protein FtsK
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -73
score = 4.35799
sequence = TCGACCGTGTGTGCTA

Gene: Haur_4844: Cell division protein FtsK
Cell division protein FtsK
 
CRON 2.
mutL
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_1936: DNA mismatch repair protein MutL
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_1241: DNA mismatch repair protein MutL
*
Roseiflexus castenholzii DSM 13941

Site:
position = -33
score = 4.32795
sequence = TCGCATACGTGTTCGT

Gene: Rcas_0100: DNA mismatch repair protein MutL
*
Roseiflexus sp. RS-1

Site:
position = -34
score = 4.39008
sequence = TCGCATACGTGTTCGC

Gene: RoseRS_4548: DNA mismatch repair protein MutL
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -76
score = 4.29024
sequence = TAGCTCATTTATGCTA

Gene: Haur_2999: DNA mismatch repair protein MutL
DNA mismatch repair protein MutL
 
CRON 3.
mutS
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3768: DNA mismatch repair protein MutS
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_3199: DNA mismatch repair protein MutS
*
Roseiflexus castenholzii DSM 13941

Site:
position = -42
score = 4.72092
sequence = TAGAACATCGGTACGA

Gene: Rcas_3531: DNA mismatch repair protein MutS
*
Roseiflexus sp. RS-1

Site:
position = -47
score = 4.72092
sequence = TAGAACATCGGTACGA

Gene: RoseRS_3706: DNA mismatch repair protein MutS
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -82
score = 4.45307
sequence = TAGCACAGATGTTCAA

Gene: Haur_4078: DNA mismatch repair protein MutS
DNA mismatch repair protein MutS
 
CRON 4.
polA
*
Chloroflexus aggregans DSM 9485

Site:
position = -207
score = 4.32161
sequence = GAGCACATTCGTGCGC

Gene: Cagg_3590: DNA polymerase I (EC 2.7.7.7)
*
Chloroflexus sp. Y-400-fl

Site:
position = -30
score = 4.61833
sequence = TAGCAAATCTGTGCGG

Gene: Chy400_0368: DNA polymerase I (EC 2.7.7.7)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_1512: DNA polymerase I (EC 2.7.7.7)
 
Roseiflexus sp. RS-1

Gene: RoseRS_3415: DNA polymerase I (EC 2.7.7.7)
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -92
score = 4.00978
sequence = ATGAACAAATGTTCGA

Gene: Haur_0069: DNA polymerase I (EC 2.7.7.7)
DNA polymerase I (EC 2.7.7.7)
 
CRON 5.
uvdE
*
Chloroflexus aggregans DSM 9485

Site:
position = -86
score = 4.84086
sequence = TCGAACAAATGTACTA

Gene: Cagg_3654: UV damage repair endonuclease-like protein
*
Chloroflexus sp. Y-400-fl

Site:
position = -101
score = 4.43199
sequence = ACGAACATTTGTCCTA

Gene: Chy400_0262: UV damage repair endonuclease-like protein
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2319: UV damage repair endonuclease-like protein
 
Roseiflexus sp. RS-1

Gene: RoseRS_1694: UV damage repair endonuclease-like protein
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_0383: UV damage repair endonuclease-like protein
UV damage repair endonuclease-like protein
 
CRON 6.
sbcC
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2951: Exonuclease SbcC
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2419: Exonuclease SbcC
*
Roseiflexus castenholzii DSM 13941

Site:
position = -32
score = 4.14356
sequence = GCGCGCATCTGTTCGA

Gene: Rcas_4093: Exonuclease SbcC
*
Roseiflexus sp. RS-1

Site:
position = -34
score = 4.19135
sequence = ACGCGCATCTGTTCGA

Gene: RoseRS_0905: Exonuclease SbcC
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -35
score = 4.2788
sequence = TAGCAAATTTGTACGC

Gene: Haur_3179: Exonuclease SbcC
Exonuclease SbcC
 
CRON 7.
uvrA
 2
Chloroflexus aggregans DSM 9485

Gene: Cagg_0015: Excinuclease ABC subunit A

Gene: Cagg_2343: Excinuclease ABC subunit A
 2
Chloroflexus sp. Y-400-fl

Gene: Chy400_1829: Excinuclease ABC subunit A

Gene: Chy400_2856: Excinuclease ABC subunit A
*2
Roseiflexus castenholzii DSM 13941

Site:
position = -107
score = 4.66279
sequence = TCGCACACCTGTTCAC

Gene: Rcas_4419: Excinuclease ABC subunit A

Gene: Rcas_0572: Excinuclease ABC subunit A
*2
Roseiflexus sp. RS-1

Site:
position = -103
score = 4.02444
sequence = TCGCACGTCTGTTCAT

Gene: RoseRS_3438: Excinuclease ABC subunit A

Gene: RoseRS_3848: Excinuclease ABC subunit A
 2
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_4118: Excinuclease ABC subunit A

Gene: Haur_4583: Excinuclease ABC subunit A
Excinuclease ABC subunit A
 
CRON 8.
Cagg_1574
*
Chloroflexus aggregans DSM 9485

Site:
position = -127
score = 4.65812
sequence = AAGAACAATTGTTCTA

Gene: Cagg_1574: Conserved hypothetical protein
*
Chloroflexus sp. Y-400-fl

Site:
position = -177
score = 5.22956
sequence = TAGAACACTTGTTCTA

Gene: Chy400_2036: Conserved hypothetical protein
*
Roseiflexus castenholzii DSM 13941

Site:
position = -129
score = 4.68408
sequence = TAGAACACATGTTCTT

Gene: Rcas_2146: Conserved hypothetical protein
*
Roseiflexus sp. RS-1

Site:
position = -135
score = 4.92433
sequence = TAGAACAAATGTTCGA

Gene: RoseRS_3028: Conserved hypothetical protein
 
Herpetosiphon aurantiacus ATCC 23779
Conserved hypothetical protein
Cagg_1573
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_1573: Conserved hypothetical protein
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2037: Conserved hypothetical protein
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2145: Conserved hypothetical protein
 
Roseiflexus sp. RS-1

Gene: RoseRS_3029: Conserved hypothetical protein
 
Herpetosiphon aurantiacus ATCC 23779
Conserved hypothetical protein
 
CRON 9.
parB
*
Chloroflexus aggregans DSM 9485

Site:
position = -73
score = 4.56017
sequence = TGGTACACTTGTTCGG

Gene: Cagg_0177: Chromosome partitioning protein ParB
*
Chloroflexus sp. Y-400-fl

Site:
position = -74
score = 4.54568
sequence = TGGCACAATTGTTCGG

Gene: Chy400_2955: Chromosome partitioning protein ParB
*
Roseiflexus castenholzii DSM 13941

Site:
position = -83
score = 4.57308
sequence = CCGAACATCTGTACTG

Gene: Rcas_2543: Chromosome partitioning protein ParB
*
Roseiflexus sp. RS-1

Site:
position = -40
score = 4.59088
sequence = CCGAACACCTGTGCAG

Gene: RoseRS_2821: Chromosome partitioning protein ParB
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -58
score = 4.01554
sequence = CAGAATAGGTGTGCTA

Gene: Haur_3186: Chromosome partitioning protein ParB
Chromosome partitioning protein ParB
 
CRON 10.
Haur_4111
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -8
score = 4.70419
sequence = TAGAATATATGTTCTA

Gene: Haur_4111: Hypothetical protein
Hypothetical protein
ssb
*
Chloroflexus aggregans DSM 9485

Site:
position = -88
score = 4.53621
sequence = TAGCACAATAGTTCGA

Gene: Cagg_2703: Single-stranded DNA-binding protein
*
Chloroflexus sp. Y-400-fl

Site:
position = -88
score = 4.58894
sequence = TCGCACAATAGTTCGA

Gene: Chy400_0945: Single-stranded DNA-binding protein
*
Roseiflexus castenholzii DSM 13941

Site:
position = -114
score = 4.34834
sequence = TGGAACATGCATGCTA

Gene: Rcas_0027: Single-stranded DNA-binding protein
*
Roseiflexus sp. RS-1

Site:
position = -115
score = 4.34834
sequence = TGGAACATGCATGCTA

Gene: RoseRS_0828: Single-stranded DNA-binding protein
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_4110: Single-stranded DNA-binding protein
Single-stranded DNA-binding protein
 
CRON 11.
ruvB
*
Chloroflexus aggregans DSM 9485

Site:
position = -37
score = 4.76202
sequence = GCGTACACCTGTGCGA

Gene: Cagg_0868: Holliday junction DNA helicase RuvB
*
Chloroflexus sp. Y-400-fl

Site:
position = -37
score = 4.76202
sequence = GCGTACACCTGTGCGA

Gene: Chy400_3332: Holliday junction DNA helicase RuvB
*
Roseiflexus castenholzii DSM 13941

Site:
position = -24
score = 4.69059
sequence = CCGCACACGTGTGCGG

Gene: Rcas_3053: Holliday junction DNA helicase RuvB
*
Roseiflexus sp. RS-1

Site:
position = -24
score = 4.69059
sequence = CCGCACACGTGTGCGG

Gene: RoseRS_2425: Holliday junction DNA helicase RuvB
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -37
score = 4.03815
sequence = GCGACCGTCTGTGCTA

Gene: Haur_2295: Holliday junction DNA helicase RuvB
Holliday junction DNA helicase RuvB
 
CRON 12.
Cagg_3684
*
Chloroflexus aggregans DSM 9485

Site:
position = -90
score = 5.14622
sequence = TCGAACATGTGTGCAA

Gene: Cagg_3684: Conserved hypothetical protein
*
Chloroflexus sp. Y-400-fl

Site:
position = -85
score = 4.43146
sequence = TAGAACATATGAACTA

Gene: Chy400_3255: Conserved hypothetical protein
*
Roseiflexus castenholzii DSM 13941

Site:
position = -86
score = 4.29025
sequence = TCGAACACACGTTCAT

Gene: Rcas_4196: Conserved hypothetical protein
*
Roseiflexus sp. RS-1

Site:
position = -86
score = 4.1086
sequence = ACGAACACCCGTTCAC

Gene: RoseRS_0046: Conserved hypothetical protein
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -166
score = 4.92332
sequence = TCGAAAATTTGTGCTA

Gene: Haur_4373: Conserved hypothetical protein
Conserved hypothetical protein
gyrB
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3685: DNA gyrase subunit B (EC 5.99.1.3)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_3254: DNA gyrase subunit B (EC 5.99.1.3)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_4195: DNA gyrase subunit B (EC 5.99.1.3)
 
Roseiflexus sp. RS-1

Gene: RoseRS_0047: DNA gyrase subunit B (EC 5.99.1.3)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_4372: DNA gyrase subunit B (EC 5.99.1.3)
DNA gyrase subunit B (EC 5.99.1.3)
 
CRON 13.
recA
*
Chloroflexus aggregans DSM 9485

Site:
position = -126
score = 5.12661
sequence = TCGTACACTTGTGCTA

Site:
position = -107
score = 4.79994
sequence = TAGCACATATGTACGG

Gene: Cagg_1747: Recombinase A
*
Chloroflexus sp. Y-400-fl

Site:
position = -126
score = 5.32602
sequence = TCGCACACCTGTGCTA

Site:
position = -107
score = 4.79994
sequence = TAGCACATATGTACGG

Gene: Chy400_1482: Recombinase A
*
Roseiflexus castenholzii DSM 13941

Site:
position = -137
score = 4.95499
sequence = TAGCCCACTTGTGCGA

Site:
position = -120
score = 4.25019
sequence = AAGAACCTTCGTGCTA

Gene: Rcas_2960: Recombinase A
*
Roseiflexus sp. RS-1

Site:
position = -120
score = 4.25019
sequence = AAGAACCTTCGTGCTA

Site:
position = -137
score = 4.95499
sequence = TAGCCCACTTGTGCGA

Gene: RoseRS_3118: Recombinase A
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -91
score = 4.74012
sequence = ACGAACAAGTGTGCTA

Gene: Haur_4194: Recombinase A
Recombinase A
recX
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_1746: Regulatory protein RecX
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_1231: Regulatory protein RecX
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1

Gene: RoseRS_3117: Regulatory protein RecX
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_4193: Regulatory protein RecX
Regulatory protein RecX
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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