Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L10_leader - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: L10_leader
RFAM: RF00557
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 2 1
Lactobacillus reuteri JCM 1112 2 1
Lactobacillus helveticus DPC 4571 2 1
Lactobacillus fermentum IFO 3956 2 1
Lactobacillus salivarius subsp. salivarius UCC118 2 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 1
Lactobacillus acidophilus NCFM 2 1
Lactobacillus johnsonii NCC 533 2 1
Lactobacillus plantarum WCFS1 2 1
Lactobacillus casei ATCC 334 2 1
Lactobacillus brevis ATCC 367 2 1
Lactobacillus sakei subsp. sakei 23K 2 1
Pediococcus pentosaceus ATCC 25745 2 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 1
Lactobacillus rhamnosus GG 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplJ
*
Oenococcus oeni PSU-1

Site:
position = -136
score = 38.28
sequence = AAAGTAAATATCGTT...

Gene: OEOE_1417: 50S ribosomal protein L10
*
Lactobacillus reuteri JCM 1112

Site:
position = -150
score = 75.61
sequence = GATTAAATATGACTC...

Gene: LAR_0302: 50S ribosomal protein L10
*
Lactobacillus helveticus DPC 4571

Site:
position = -163
score = 70.98
sequence = AATAACTGTAAATTC...

Gene: lhv_0395: 50S ribosomal protein L10
*
Lactobacillus fermentum IFO 3956

Site:
position = -148
score = 68.13
sequence = GATTAAATATGACTC...

Gene: LAF_0271: 50S ribosomal protein L10
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -156
score = 75.08
sequence = GGTCAAGTTAATAAT...

Gene: LSL_1238: 50S ribosomal protein L10
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -164
score = 69.35
sequence = AGATAAAGTAAATTT...

Gene: LBUL_1537: 50S ribosomal protein L10
*
Lactobacillus acidophilus NCFM

Site:
position = -163
score = 70.24
sequence = GTTAATTGTAAATTC...

Gene: LBA0369: 50S ribosomal protein L10
*
Lactobacillus johnsonii NCC 533

Site:
position = -160
score = 78.93
sequence = TTGTACAGTAAATTC...

Gene: LJ0415: 50S ribosomal protein L10
*
Lactobacillus plantarum WCFS1

Site:
position = -142
score = 73.12
sequence = GTTAAGTAATATCTC...

Gene: lp_0621: 50S ribosomal protein L10
*
Lactobacillus casei ATCC 334

Site:
position = -156
score = 75.34
sequence = TTTGTGATCATTCAC...

Gene: LSEI_2273: 50S ribosomal protein L10
*
Lactobacillus brevis ATCC 367

Site:
position = -152
score = 76.66
sequence = AGTTATGAATTGATC...

Gene: LVIS_0590: 50S ribosomal protein L10
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -164
score = 79.09
sequence = TAGTTGGTTATTTAT...

Gene: LSA1667: 50S ribosomal protein L10
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -153
score = 60.92
sequence = ATTATAACTGAATAA...

Gene: PEPE_1491: 50S ribosomal protein L10
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -145
score = 68.39
sequence = TAATTGAATCCATTT...

Gene: LEUM_0271: 50S ribosomal protein L10
*
Lactobacillus rhamnosus GG

Site:
position = -154
score = 73.67
sequence = GTTGTGATTAGTCAC...

Gene: LGG_02277: 50S ribosomal protein L10
50S ribosomal protein L10
rplL
 
Oenococcus oeni PSU-1

Gene: OEOE_1416: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0303: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0396: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0272: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1237: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1536: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus acidophilus NCFM

Gene: LBA0370: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0416: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus plantarum WCFS1

Gene: lp_0622: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus casei ATCC 334

Gene: LSEI_2272: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0591: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1666: LSU ribosomal protein L7/L12 (P1/P2)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1490: LSU ribosomal protein L7/L12 (P1/P2)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0272: LSU ribosomal protein L7/L12 (P1/P2)
 
Lactobacillus rhamnosus GG

Gene: LGG_02276: LSU ribosomal protein L7/L12 (P1/P2)
LSU ribosomal protein L7/L12 (P1/P2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD