Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Cobalamin - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Pediococcus pentosaceus ATCC 25745
Lactobacillus sakei subsp. sakei 23K
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus plantarum WCFS1
Lactobacillus johnsonii NCC 533
Lactobacillus acidophilus NCFM
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
LVIS_2082
 
Oenococcus oeni PSU-1
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Pediococcus pentosaceus ATCC 25745
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2082: hypothetical protein
 
Lactobacillus casei ATCC 334
 
Lactobacillus plantarum WCFS1
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus acidophilus NCFM
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus fermentum IFO 3956
*
Lactobacillus helveticus DPC 4571

Site:
position = -383
score = 79.23
sequence = AACGCGCGCTATGCT...

Gene: lhv_1952: hypothetical protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD