Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuR2 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Acyclic terpenes degradation
Effector:
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236 7 2
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Rfer_2819
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -127
score = 5.56798
sequence = GGTGACGTTAACGTCAAC

Gene: Rfer_2819: Sterol carrier family protein
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Sterol carrier family protein
liuR2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2820: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
CRON 2.
atuC
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0317: Geranyl-CoA carboxylase carboxyl transferase subunit
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -57
score = 5.56798
sequence = GTTGACGTTAACGTCACC

Gene: Rfer_2818: Geranyl-CoA carboxylase carboxyl transferase subunit
 
Variovorax paradoxus S110

Gene: Vapar_0327: Geranyl-CoA carboxylase carboxyl transferase subunit
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1897: Geranyl-CoA carboxylase carboxyl transferase subunit
Geranyl-CoA carboxylase carboxyl transferase subunit
atuD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0318: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2817: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Variovorax paradoxus S110

Gene: Vapar_0324: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1896: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
atuE
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0319: Isohexenylglutaconyl-CoA hydratase
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2816: Isohexenylglutaconyl-CoA hydratase
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Isohexenylglutaconyl-CoA hydratase
atuF
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0320: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2815: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Variovorax paradoxus S110

Gene: Vapar_0326: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1895: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Rfer_2814
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0322: protein of unknown function DUF849
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2814: protein of unknown function DUF849
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1894: protein of unknown function DUF849
protein of unknown function DUF849
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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