Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuR - Caulobacterales

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 8 2
Caulobacter segnis ATCC 21756 7 2
Caulobacter sp. K31 9 3
Phenylobacterium zucineum HLK1 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
liuR
*
Caulobacter crescentus CB15

Site:
position = -108
score = 5.14201
sequence = GTTTACGTAAGCGTTGAC

Site:
position = -114
score = 5.6187
sequence = GTTGACGTTTACGTAAGC

Gene: CC0081: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Caulobacter segnis ATCC 21756

Site:
position = -107
score = 5.14201
sequence = GTTTACGTAAGCGTTGAC

Site:
position = -113
score = 5.19804
sequence = ATTGACGTTTACGTAAGC

Gene: Cseg_0076: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Caulobacter sp. K31

Site:
position = -101
score = 5.14201
sequence = GTTTACGTAAGCGTTGAC

Site:
position = -107
score = 5.6187
sequence = GTTGACGTTTACGTAAGC

Gene: Caul_0132: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*2
Phenylobacterium zucineum HLK1

Site:
position = -64
score = 4.88569
sequence = CTTGACGTAAACGGAAAG

Gene: PHZ_c3353: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

Gene: PHZ_c2019: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
acdH
 
Caulobacter crescentus CB15

Gene: CC0080: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_0075: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Caulobacter sp. K31

Gene: Caul_0131: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c3354: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Acyl-CoA dehydrogenase (EC 1.3.99.3)
acdL
 
Caulobacter crescentus CB15

Gene: CC0079: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_0074: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
Caulobacter sp. K31

Gene: Caul_0130: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
Phenylobacterium zucineum HLK1
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
CC0078
 
Caulobacter crescentus CB15

Gene: CC0078: hypothetical protein
 
Caulobacter segnis ATCC 21756

Gene: Cseg_0073: hypothetical protein
 
Caulobacter sp. K31

Gene: Caul_0128: hypothetical protein
 
Phenylobacterium zucineum HLK1
hypothetical protein
acdA
 
Caulobacter crescentus CB15

Gene: CC0077: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_0072: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Caulobacter sp. K31

Gene: Caul_0126: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Phenylobacterium zucineum HLK1
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
acdB
 
Caulobacter crescentus CB15

Gene: CC0076: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Caulobacter segnis ATCC 21756
 
Caulobacter sp. K31

Gene: Caul_0125: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Phenylobacterium zucineum HLK1
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Caul_0129
 
Caulobacter crescentus CB15
 
Caulobacter segnis ATCC 21756
 
Caulobacter sp. K31

Gene: Caul_0129: hypothetical protein
 
Phenylobacterium zucineum HLK1
hypothetical protein
PHZ_c3355
 
Caulobacter crescentus CB15
 
Caulobacter segnis ATCC 21756
 
Caulobacter sp. K31
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c3355: predicted redox protein, regulator of disulfide bond formation
predicted redox protein, regulator of disulfide bond formation
 
CRON 2.
acdL2
*
Caulobacter crescentus CB15

Site:
position = -105
score = 5.56069
sequence = GTTGACGCTAACGTCATC

Gene: CC1310: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
*
Caulobacter segnis ATCC 21756

Site:
position = -106
score = 5.56069
sequence = GTTGACGCTAACGTCATC

Gene: Cseg_1597: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
*
Caulobacter sp. K31

Site:
position = -101
score = 5.10474
sequence = GTTGACGCTAAGGTCATC

Site:
position = -107
score = 4.42325
sequence = GTTTACGTTGACGCTAAG

Gene: Caul_2048: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
*
Phenylobacterium zucineum HLK1

Site:
position = -94
score = 5.11343
sequence = GTTTACGTTGACGTTAGC

Site:
position = -88
score = 5.56069
sequence = GTTGACGTTAGCGTCATC

Gene: PHZ_c2336: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdH2
 
Caulobacter crescentus CB15

Gene: CC1311: Acyl-CoA dehydrogenase family protein
 
Caulobacter segnis ATCC 21756

Gene: Cseg_1598: Acyl-CoA dehydrogenase family protein
 
Caulobacter sp. K31

Gene: Caul_2049: Acyl-CoA dehydrogenase family protein
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c2335: Acyl-CoA dehydrogenase family protein
Acyl-CoA dehydrogenase family protein
 
CRON 3.
etfB
 
Caulobacter crescentus CB15

Gene: CC0727: Electron transfer flavoprotein, beta subunit
 
Caulobacter segnis ATCC 21756

Gene: Cseg_3663: Electron transfer flavoprotein, beta subunit
*
Caulobacter sp. K31

Site:
position = -97
score = 4.9505
sequence = CCTTACGCTTACGTCAGG

Gene: Caul_1047: Electron transfer flavoprotein, beta subunit
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c3150: Electron transfer flavoprotein, beta subunit
Electron transfer flavoprotein, beta subunit
etfA
 
Caulobacter crescentus CB15

Gene: CC0726: Electron transfer flavoprotein, alpha subunit
 
Caulobacter segnis ATCC 21756

Gene: Cseg_3664: Electron transfer flavoprotein, alpha subunit
 
Caulobacter sp. K31

Gene: Caul_1046: Electron transfer flavoprotein, alpha subunit
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c3151: Electron transfer flavoprotein, alpha subunit
Electron transfer flavoprotein, alpha subunit
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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