Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuR - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 65 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594 15 7
Erythrobacter sp. NAP1 19 9
Novosphingobium aromaticivorans DSM 12444 9 5
Sphingopyxis alaskensis RB2256 34 18
Sphingobium japonicum UT26S 6 4
Sphingomonas wittichii RW1 1 1
Zymomonas mobilis subsp. mobilis ZM4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
liuR
*
Erythrobacter litoralis HTCC2594

Site:
position = -37
score = 5.27086
sequence = CTTGACCTTTACGTAAAG

Site:
position = -31
score = 4.68921
sequence = CTTTACGTAAAGGGCATG

Gene: ELI_05890: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Erythrobacter sp. NAP1

Site:
position = -30
score = 5.37222
sequence = GTTCACGTAAAGGTAAAG

Site:
position = -36
score = 5.75913
sequence = CTTGACGTTCACGTAAAG

Gene: NAP1_05180: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -37
score = 5.01269
sequence = ATTGACGCTTACGTAAGG

Site:
position = -31
score = 4.50571
sequence = GCTTACGTAAGGGGCAGG

Gene: Saro_2106: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Sphingopyxis alaskensis RB2256

Site:
position = -1
score = 5.32683
sequence = ATTGACGTTCACGTCAAC

Site:
position = 5
score = 5.26614
sequence = GTTCACGTCAACGGAAAC

Gene: Sala_1538: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Sphingobium japonicum UT26S

Site:
position = -37
score = 6.10613
sequence = CTTGACGTAAACGTAAAG

Gene: SJA_C1-09700: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Sphingomonas wittichii RW1

Gene: Swit_0576: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Zymomonas mobilis subsp. mobilis ZM4
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
acdH
 
Erythrobacter litoralis HTCC2594

Gene: ELI_05895: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Erythrobacter sp. NAP1

Gene: NAP1_05185: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2105: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1537: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Sphingobium japonicum UT26S

Gene: SJA_C1-09690: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
CRON 2.
Sala_0379
 
Erythrobacter litoralis HTCC2594

Gene: ELI_14570: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
 
Erythrobacter sp. NAP1

Gene: NAP1_11598: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
 
Novosphingobium aromaticivorans DSM 12444
*
Sphingopyxis alaskensis RB2256

Site:
position = -41
score = 6.0054
sequence = CTTGACGTTAACGTCAAC

Gene: Sala_0379: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
 
Sphingobium japonicum UT26S

Gene: SJA_C1-02010: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
 
CRON 3.
etfD
 
Erythrobacter litoralis HTCC2594

Gene: ELI_06930: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Erythrobacter sp. NAP1

Gene: NAP1_06170: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1781: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Sphingopyxis alaskensis RB2256

Site:
position = -99
score = 4.74627
sequence = GTTGACGGGCGCGTCAAT

Gene: Sala_1185: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Sphingobium japonicum UT26S

Gene: SJA_C1-17330: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Sphingomonas wittichii RW1

Site:
position = -90
score = 4.69331
sequence = GTTGACGAAGGCGTCAAT

Gene: Swit_4100: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO1184: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
CRON 4.
acdH4
 
Erythrobacter litoralis HTCC2594

Gene: ELI_09620: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Erythrobacter sp. NAP1

Gene: NAP1_10047: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0996: Acyl-CoA dehydrogenase (EC 1.3.99.3)
*
Sphingopyxis alaskensis RB2256

Site:
position = -34
score = 5.96959
sequence = GTTTACGTGAACGTAAAG

Site:
position = -28
score = 4.44539
sequence = GTGAACGTAAAGGGAAAG

Gene: Sala_3074: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Sphingobium japonicum UT26S

Gene: SJA_C2-02830: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Sala_3073
 
Erythrobacter litoralis HTCC2594

Gene: ELI_09625: Alcohol dehydrogenase (EC 1.1.1.1)
 
Erythrobacter sp. NAP1

Gene: NAP1_10052: Alcohol dehydrogenase (EC 1.1.1.1)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0995: Alcohol dehydrogenase (EC 1.1.1.1)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_3073: Alcohol dehydrogenase (EC 1.1.1.1)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Alcohol dehydrogenase (EC 1.1.1.1)
Sala_3072
 
Erythrobacter litoralis HTCC2594

Gene: ELI_09630: Predicted aminoglycoside phosphotransferase
 
Erythrobacter sp. NAP1

Gene: NAP1_10057: Predicted aminoglycoside phosphotransferase
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0994: Predicted aminoglycoside phosphotransferase
 
Sphingopyxis alaskensis RB2256

Gene: Sala_3072: Predicted aminoglycoside phosphotransferase
 
Sphingobium japonicum UT26S

Gene: SJA_C2-02820: Predicted aminoglycoside phosphotransferase
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Predicted aminoglycoside phosphotransferase
Sala_0761
 
Erythrobacter litoralis HTCC2594

Gene: ELI_11495: Bll4978 protein
 
Erythrobacter sp. NAP1

Gene: NAP1_14648: Bll4978 protein
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0147: Bll4978 protein
*
Sphingopyxis alaskensis RB2256

Site:
position = -23
score = 4.78959
sequence = GTTTACGTAAAGGGAGAG

Site:
position = -29
score = 5.9536
sequence = CTTGACGTTTACGTAAAG

Gene: Sala_0761: Bll4978 protein
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Bll4978 protein
Saro_0871
 
Erythrobacter litoralis HTCC2594

Gene: ELI_10140: TesB-like acyl-CoA thioesterase 1
 2
Erythrobacter sp. NAP1

Gene: NAP1_10643: TesB-like acyl-CoA thioesterase 1

Gene: NAP1_08055: TesB-like acyl-CoA thioesterase 1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0760: TesB-like acyl-CoA thioesterase 1
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
TesB-like acyl-CoA thioesterase 1
 
CRON 5.
acdH3
 
Erythrobacter litoralis HTCC2594

Gene: ELI_00060: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Erythrobacter sp. NAP1

Gene: NAP1_09237: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0132: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Sphingopyxis alaskensis RB2256

Site:
position = -87
score = 5.45983
sequence = GTGGACGTAAACGTAAGG

Site:
position = -93
score = 5.44474
sequence = CTTGACGTGGACGTAAAC

Gene: Sala_3159: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_1764: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
acdA3
*
Erythrobacter litoralis HTCC2594

Site:
position = -58
score = 5.64971
sequence = GTTGACGCAAACGTAAGG

Gene: ELI_01475: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
*
Erythrobacter sp. NAP1

Site:
position = -32
score = 5.3468
sequence = GTTTACGTAAACGGGAAG

Gene: NAP1_00605: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1069: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_3158: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Sphingobium japonicum UT26S

Gene: SJA_C2-03860: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Sphingomonas wittichii RW1

Gene: Swit_1006: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Zymomonas mobilis subsp. mobilis ZM4
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Sala_3157
 
Erythrobacter litoralis HTCC2594

Gene: ELI_01480: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Erythrobacter sp. NAP1

Gene: NAP1_00610: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1070: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_3157: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Sphingobium japonicum UT26S
 3
Sphingomonas wittichii RW1

Gene: Swit_1009: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)

Gene: Swit_1602: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)

Gene: Swit_1772: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Zymomonas mobilis subsp. mobilis ZM4
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Sala_3156
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_3156: putative 4-hydroxybenzoyl-CoA thioesterase
 
Sphingobium japonicum UT26S

Gene: SJA_C1-08110: putative 4-hydroxybenzoyl-CoA thioesterase
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
putative 4-hydroxybenzoyl-CoA thioesterase
fpr
 
Erythrobacter litoralis HTCC2594
*
Erythrobacter sp. NAP1

Site:
position = -60
score = 4.93303
sequence = GTTGACGGACACGTCACC

Gene: NAP1_09247: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1032: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Sphingobium japonicum UT26S

Gene: SJA_C1-10850: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Sphingomonas wittichii RW1

Gene: Swit_0104: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO1753: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
NAP1_09242
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1

Gene: NAP1_09242: hypothetical protein
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
hypothetical protein
acdB4
 
Erythrobacter litoralis HTCC2594

Gene: ELI_01485: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
 
Erythrobacter sp. NAP1

Gene: NAP1_00635: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1071: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
*
Sphingopyxis alaskensis RB2256

Site:
position = -75
score = 5.61654
sequence = CCTTACGTTTACGTAAAG

Gene: Sala_0583: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
 
Sphingobium japonicum UT26S
 2
Sphingomonas wittichii RW1

Gene: Swit_1011: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)

Gene: Swit_2021: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
 
Zymomonas mobilis subsp. mobilis ZM4
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
acdA
*
Erythrobacter litoralis HTCC2594

Site:
position = -73
score = 5.7313
sequence = GTTGACGTTTTCGTAAAG

Gene: ELI_00050: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Erythrobacter sp. NAP1

Site:
position = -90
score = 5.60564
sequence = GTTGACGTATCCGTAAAG

Gene: NAP1_15378: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1283: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Enoyl-CoA hydratase (EC 4.2.1.17)
ELI_00055
 
Erythrobacter litoralis HTCC2594

Gene: ELI_00055: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2045: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1242: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
 
Sphingobium japonicum UT26S

Gene: SJA_C2-03980: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
 
Sphingomonas wittichii RW1

Gene: Swit_1734: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
 
Zymomonas mobilis subsp. mobilis ZM4
Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
NAP1_15373
 
Erythrobacter litoralis HTCC2594

Gene: ELI_11075: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
Erythrobacter sp. NAP1

Gene: NAP1_15373: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_1998: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
Zymomonas mobilis subsp. mobilis ZM4
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
 
CRON 6.
acdB3
 
Erythrobacter litoralis HTCC2594

Gene: ELI_04900: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Erythrobacter sp. NAP1

Gene: NAP1_04055: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1897: Enoyl-CoA hydratase (EC 4.2.1.17)
*
Sphingopyxis alaskensis RB2256

Site:
position = -41
score = 4.81386
sequence = GTGAACGTAAAGGTAAAG

Site:
position = -47
score = 5.85227
sequence = CTTTACGTGAACGTAAAG

Gene: Sala_1487: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Sphingobium japonicum UT26S

Gene: SJA_C2-03900: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Sphingomonas wittichii RW1

Gene: Swit_1999: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Zymomonas mobilis subsp. mobilis ZM4
Enoyl-CoA hydratase (EC 4.2.1.17)
 
CRON 7.
Sala_0922
 
Erythrobacter litoralis HTCC2594

Gene: ELI_05445: 2-nitropropane dioxygenase family protein
 
Erythrobacter sp. NAP1

Gene: NAP1_04665: 2-nitropropane dioxygenase family protein
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2269: 2-nitropropane dioxygenase family protein
*
Sphingopyxis alaskensis RB2256

Site:
position = -44
score = 5.05671
sequence = GCTTACGTTAAGGTCAAT

Site:
position = -50
score = 4.40566
sequence = CTTTCCGCTTACGTTAAG

Gene: Sala_0922: 2-nitropropane dioxygenase family protein
 2
Sphingobium japonicum UT26S

Gene: SJA_C1-21850: 2-nitropropane dioxygenase family protein

Gene: SJA_C1-32700: 2-nitropropane dioxygenase family protein
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
2-nitropropane dioxygenase family protein
 
CRON 8.
Sala_1639
 
Erythrobacter litoralis HTCC2594

Gene: ELI_05950: MoxR-like ATPases
 
Erythrobacter sp. NAP1

Gene: NAP1_05250: MoxR-like ATPases
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2090: MoxR-like ATPases
*
Sphingopyxis alaskensis RB2256

Site:
position = -35
score = 5.15399
sequence = CTTGACGTTCACGTTAAG

Site:
position = -29
score = 4.96815
sequence = GTTCACGTTAAGGGAAAG

Gene: Sala_1639: MoxR-like ATPases
 
Sphingobium japonicum UT26S

Gene: SJA_C1-14310: MoxR-like ATPases
 
Sphingomonas wittichii RW1

Gene: Swit_2638: MoxR-like ATPases
 
Zymomonas mobilis subsp. mobilis ZM4
MoxR-like ATPases
 
CRON 9.
acdB2
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
*
Sphingopyxis alaskensis RB2256

Site:
position = -54
score = 6.15832
sequence = GTTGACGTAAACGTCAAC

Gene: Sala_1808: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Enoyl-CoA hydratase (EC 4.2.1.17)
acdA2
 
Erythrobacter litoralis HTCC2594

Gene: ELI_00285: Acetyl-CoA acetyltransferase
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1809: Acetyl-CoA acetyltransferase
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acetyl-CoA acetyltransferase
 
CRON 10.
Sala_1854
 
Erythrobacter litoralis HTCC2594

Gene: ELI_09905: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
 
Erythrobacter sp. NAP1

Gene: NAP1_10308: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2593: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
*
Sphingopyxis alaskensis RB2256

Site:
position = -36
score = 4.85347
sequence = CATGACGTTTCCGTCAAC

Site:
position = -30
score = 5.22291
sequence = GTTTCCGTCAACGTAAGC

Gene: Sala_1854: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
 
CRON 11.
acdL2
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1

Gene: NAP1_09632: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Novosphingobium aromaticivorans DSM 12444
*
Sphingopyxis alaskensis RB2256

Site:
position = -64
score = 5.40297
sequence = CTTGCCGTTTACGTAAAG

Site:
position = -58
score = 5.06809
sequence = GTTTACGTAAAGGTGAGC

Gene: Sala_1104: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdH2
 
Erythrobacter litoralis HTCC2594

Gene: ELI_09235: Acyl-CoA dehydrogenase family protein
 2
Erythrobacter sp. NAP1

Gene: NAP1_00170: Acyl-CoA dehydrogenase family protein

Gene: NAP1_09627: Acyl-CoA dehydrogenase family protein
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1105: Acyl-CoA dehydrogenase family protein
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase family protein
 
CRON 12.
acdH5
 
Erythrobacter litoralis HTCC2594

Gene: ELI_11490: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
*
Sphingopyxis alaskensis RB2256

Site:
position = -36
score = 5.88846
sequence = CTTGACGTTTACGTCAAC

Gene: Sala_2313: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
CRON 13.
ELI_08825
*
Erythrobacter litoralis HTCC2594

Site:
position = -71
score = 5.05701
sequence = GTTGACGGGCGCGTAAAG

Gene: ELI_08825: Possible 3-oxo-(Acyl) acyl carrier protein reductase
*
Erythrobacter sp. NAP1

Site:
position = -70
score = 5.38411
sequence = GTTTACGCGAGCGTAAAG

Gene: NAP1_08185: Possible 3-oxo-(Acyl) acyl carrier protein reductase
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2673: Possible 3-oxo-(Acyl) acyl carrier protein reductase
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0531: Possible 3-oxo-(Acyl) acyl carrier protein reductase
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Possible 3-oxo-(Acyl) acyl carrier protein reductase
 
CRON 14.
Saro_1064
 
Erythrobacter litoralis HTCC2594

Gene: ELI_02555: Acyl-CoA thioesterase II (EC 3.1.2.-)
*
Erythrobacter sp. NAP1

Site:
position = -37
score = 5.57275
sequence = CTTGACGTTTGCGTAAGC

Gene: NAP1_01850: Acyl-CoA thioesterase II (EC 3.1.2.-)
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -36
score = 5.20666
sequence = GTTGACGTAAACGGGAGC

Gene: Saro_1064: Acyl-CoA thioesterase II (EC 3.1.2.-)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1443: Acyl-CoA thioesterase II (EC 3.1.2.-)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_2248: Acyl-CoA thioesterase II (EC 3.1.2.-)
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA thioesterase II (EC 3.1.2.-)
 
CRON 15.
fadA
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
*
Sphingobium japonicum UT26S

Site:
position = -66
score = 5.87827
sequence = CTTTACGTAAACGTAAAT

Gene: SJA_C1-20790: acetyl-CoA acyltransferase
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
acetyl-CoA acyltransferase
fadB
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S

Gene: SJA_C1-20800: 3-hydroxyacyl-CoA dehydrogenase
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
3-hydroxyacyl-CoA dehydrogenase
 
CRON 16.
Sala_0297
 
Erythrobacter litoralis HTCC2594

Gene: ELI_14560: Gluconate 5-dehydrogenase (EC 1.1.1.69)
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2792: Gluconate 5-dehydrogenase (EC 1.1.1.69)
*
Sphingopyxis alaskensis RB2256

Site:
position = -56
score = 5.91271
sequence = GTTGACGTAAACGTCAAT

Gene: Sala_0297: Gluconate 5-dehydrogenase (EC 1.1.1.69)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_0996: Gluconate 5-dehydrogenase (EC 1.1.1.69)
 
Zymomonas mobilis subsp. mobilis ZM4
Gluconate 5-dehydrogenase (EC 1.1.1.69)
acdB5
 
Erythrobacter litoralis HTCC2594

Gene: ELI_07190: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1741: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0298: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_1012: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Zymomonas mobilis subsp. mobilis ZM4
Enoyl-CoA hydratase (EC 4.2.1.17)
 
CRON 17.
paaG
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -315
score = 5.05768
sequence = CTTTACGTAAAGGTCATG

Gene: Saro_3457: Enoyl-CoA hydratase/carnithine racemase
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S

Gene: SJA_C1-24270: Enoyl-CoA hydratase/carnithine racemase
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Enoyl-CoA hydratase/carnithine racemase
 
CRON 18.
acdH
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
*
Sphingopyxis alaskensis RB2256

Site:
position = -64
score = 5.88846
sequence = CTTGACGTTTACGTCAAC

Site:
position = -58
score = 5.06717
sequence = GTTTACGTCAACGTCGGG

Gene: Sala_1247: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
acdL
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1246: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdA
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1245: 3-hydroxyacyl-CoA dehydrogenase
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
3-hydroxyacyl-CoA dehydrogenase
acdB
*
Erythrobacter litoralis HTCC2594

Site:
position = -60
score = 5.48757
sequence = CTTTACGAAAACGTCAAC

Gene: ELI_00045: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
*
Erythrobacter sp. NAP1

Site:
position = -52
score = 5.49251
sequence = CTTTACGGATACGTCAAC

Gene: NAP1_15383: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2349: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1244: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1

Gene: Swit_1771: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Zymomonas mobilis subsp. mobilis ZM4
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
NAP1_15388
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1

Gene: NAP1_15388: Acetyl-CoA acetyltransferase
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2502: Acetyl-CoA acetyltransferase
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acetyl-CoA acetyltransferase
 
CRON 19.
SJA_C1-17900
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_2125: Acyl dehydratase
 
Sphingopyxis alaskensis RB2256
*
Sphingobium japonicum UT26S

Site:
position = -50
score = 5.3221
sequence = GTTTTCGTAAACGGAAAC

Site:
position = -56
score = 5.77274
sequence = GTTGACGTTTTCGTAAAC

Gene: SJA_C1-17900: Acyl dehydratase
 
Sphingomonas wittichii RW1

Gene: Swit_1390: Acyl dehydratase
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl dehydratase
 
CRON 20.
acdQ
*
Erythrobacter litoralis HTCC2594

Site:
position = -44
score = 5.06568
sequence = CCTAACGTTAGCGTCAAG

Gene: ELI_09605: Acyl-CoA dehydrogenases
*
Erythrobacter sp. NAP1

Site:
position = -55
score = 5.0393
sequence = GATAACGTAAGCGTCAAC

Site:
position = -61
score = 4.4757
sequence = AATGACGATAACGTAAGC

Gene: NAP1_10032: Acyl-CoA dehydrogenases
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -168
score = 5.29234
sequence = TTTTACGTTTACGTCAGC

Site:
position = -162
score = 4.274
sequence = GTTTACGTCAGCTTAGGG

Gene: Saro_0999: Acyl-CoA dehydrogenases
*
Sphingopyxis alaskensis RB2256

Site:
position = -63
score = 5.48544
sequence = GTTGACGCTTGCGTAAAG

Gene: Sala_3077: Acyl-CoA dehydrogenases
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenases
NAP1_10027
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1

Gene: NAP1_10027: GTPases - Sulfate adenylate transferase subunit 1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0972: GTPases - Sulfate adenylate transferase subunit 1
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
GTPases - Sulfate adenylate transferase subunit 1
acdP
 
Erythrobacter litoralis HTCC2594

Gene: ELI_09600: Acyl-CoA dehydrogenase family protein
 
Erythrobacter sp. NAP1

Gene: NAP1_10022: Acyl-CoA dehydrogenase family protein
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1000: Acyl-CoA dehydrogenase family protein
 
Sphingopyxis alaskensis RB2256

Gene: Sala_3078: Acyl-CoA dehydrogenase family protein
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Acyl-CoA dehydrogenase family protein
Saro_1001
 
Erythrobacter litoralis HTCC2594

Gene: ELI_09595: short-chain dehydrogenase/reductase SDR
 
Erythrobacter sp. NAP1

Gene: NAP1_10017: short-chain dehydrogenase/reductase SDR
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1001: short-chain dehydrogenase/reductase SDR
 
Sphingopyxis alaskensis RB2256

Gene: Sala_3079: short-chain dehydrogenase/reductase SDR
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
short-chain dehydrogenase/reductase SDR
 
CRON 21.
etfB
*
Erythrobacter litoralis HTCC2594

Site:
position = -72
score = 5.66746
sequence = GTTTACGTAAACGCAAGC

Site:
position = -78
score = 5.99504
sequence = CTTGACGTTTACGTAAAC

Gene: ELI_13505: Electron transfer flavoprotein, beta subunit
*
Erythrobacter sp. NAP1

Site:
position = -104
score = 5.99504
sequence = CTTGACGTTTACGTAAAC

Site:
position = -98
score = 5.66746
sequence = GTTTACGTAAACGCAAGC

Gene: NAP1_12578: Electron transfer flavoprotein, beta subunit
*2
Novosphingobium aromaticivorans DSM 12444

Site:
position = -57
score = 5.41011
sequence = GTTTACGTAAGCGCAAAT

Site:
position = -63
score = 5.90709
sequence = GTTGACGTTTACGTAAGC

Gene: Saro_3169: Electron transfer flavoprotein, beta subunit

Gene: Saro_0456: Electron transfer flavoprotein, beta subunit
*
Sphingopyxis alaskensis RB2256

Site:
position = -60
score = 5.41011
sequence = GTTTACGTAAGCGCAAAT

Site:
position = -66
score = 5.90709
sequence = GTTGACGTTTACGTAAGC

Gene: Sala_0178: Electron transfer flavoprotein, beta subunit
 
Sphingobium japonicum UT26S

Gene: SJA_C1-11600: Electron transfer flavoprotein, beta subunit
 
Sphingomonas wittichii RW1

Gene: Swit_3196: Electron transfer flavoprotein, beta subunit
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO1480: Electron transfer flavoprotein, beta subunit
Electron transfer flavoprotein, beta subunit
etfA
 
Erythrobacter litoralis HTCC2594

Gene: ELI_13500: Electron transfer flavoprotein, alpha subunit
 
Erythrobacter sp. NAP1

Gene: NAP1_12583: Electron transfer flavoprotein, alpha subunit
 2
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_3168: Electron transfer flavoprotein, alpha subunit

Gene: Saro_0457: Electron transfer flavoprotein, alpha subunit
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0179: Electron transfer flavoprotein, alpha subunit
 
Sphingobium japonicum UT26S

Gene: SJA_C1-11610: Electron transfer flavoprotein, alpha subunit
 
Sphingomonas wittichii RW1

Gene: Swit_3195: Electron transfer flavoprotein, alpha subunit
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO1479: Electron transfer flavoprotein, alpha subunit
Electron transfer flavoprotein, alpha subunit
 
CRON 22.
fadD
 
Erythrobacter litoralis HTCC2594

Gene: ELI_13210: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Erythrobacter sp. NAP1

Gene: NAP1_12813: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_0169: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Sphingobium japonicum UT26S

Site:
position = -44
score = 5.34443
sequence = CTTTACGCTTGCGTAAAG

Site:
position = -38
score = 4.48393
sequence = GCTTGCGTAAAGGGAAAG

Gene: SJA_C1-12520: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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