Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuR - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 19 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 5 1
Paracoccus denitrificans PD1222 5 1
Jannaschia sp. CCS1 9 1
Rhodobacterales bacterium HTCC2654 7 1
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53 5 1
Oceanicola batsensis HTCC2597 6 1
Roseovarius nubinhibens ISM 6 1
Roseovarius sp. 217 7 1
Sulfitobacter sp. EE-36
Silicibacter TM1040 7 1
Silicibacter pomeroyi DSS-3 7 1
Roseobacter sp. MED193 8 1
Hyphomonas neptunium ATCC 15444 12 6
Oceanicaulis alexandrii HTCC2633 8 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
acdL2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
*
Hyphomonas neptunium ATCC 15444

Site:
position = -95
score = 5.44903
sequence = GTTTACGTGCGCGTCACC

Gene: HNE_2094: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Oceanicaulis alexandrii HTCC2633
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdH2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_00530: Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62)
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2093: Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62)
 
Oceanicaulis alexandrii HTCC2633
Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62)
 
CRON 2.
liuR
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -87
score = 6.27315
sequence = GTTTACGTCAACGTCAAG

Gene: RSP_2200: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Paracoccus denitrificans PD1222

Site:
position = 5
score = 5.2718
sequence = CCTTACGCGAACGTCAAC

Gene: Pden_2867: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Jannaschia sp. CCS1

Site:
position = -93
score = 5.17628
sequence = AATTACGTAAACGTCATC

Gene: Jann_2969: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Rhodobacterales bacterium HTCC2654

Site:
position = -69
score = 5.72564
sequence = GTTGACGTAAACGTAATC

Gene: RB2654_20563: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13591: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Loktanella vestfoldensis SKA53

Site:
position = -84
score = 6.02906
sequence = GTTTACGTAAACGTCACC

Gene: SKA53_09319: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Oceanicola batsensis HTCC2597

Site:
position = -84
score = 5.29954
sequence = GCTTACGCTTGCGTCAAC

Gene: OB2597_06240: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Roseovarius nubinhibens ISM

Site:
position = -79
score = 5.76226
sequence = ACTTACGTAAACGTCAAT

Gene: ISM_02035: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Roseovarius sp. 217

Site:
position = -117
score = 4.58294
sequence = TCTTACGTCAACTTCAAA

Gene: ROS217_11336: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Sulfitobacter sp. EE-36

Gene: EE36_03633: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Silicibacter TM1040

Site:
position = -98
score = 5.53768
sequence = AGTTACGTAAACGTCAAG

Gene: TM1040_1556: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Silicibacter pomeroyi DSS-3

Site:
position = -87
score = 6.27315
sequence = GCTTACGTCAACGTCAAG

Gene: SPO2914: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Roseobacter sp. MED193

Site:
position = -105
score = 6.39046
sequence = GCTTACGTAAACGTCAAG

Gene: MED193_05934: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Hyphomonas neptunium ATCC 15444

Site:
position = -83
score = 5.13861
sequence = GTTGACGTGCGCGGAAAG

Gene: HNE_0667: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -36
score = 5.90252
sequence = GTTGACGTTCACGTCAAG

Gene: OA2633_06094: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
acdH
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2199: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Paracoccus denitrificans PD1222

Gene: Pden_2868: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Jannaschia sp. CCS1

Gene: Jann_2970: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_20558: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13586: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09324: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_06245: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Roseovarius nubinhibens ISM

Gene: ISM_02040: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Roseovarius sp. 217

Gene: ROS217_11341: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Sulfitobacter sp. EE-36

Gene: EE36_03638: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Silicibacter TM1040

Gene: TM1040_1557: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2915: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Roseobacter sp. MED193

Gene: MED193_05939: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0668: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_06089: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Jann_2971
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_2971: hypothetical protein
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_20553: hypothetical protein
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13581: hypothetical protein
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_06250: hypothetical protein
 
Roseovarius nubinhibens ISM

Gene: ISM_02045: hypothetical protein
 
Roseovarius sp. 217

Gene: ROS217_11346: hypothetical protein
 
Sulfitobacter sp. EE-36

Gene: EE36_03643: hypothetical protein
 
Silicibacter TM1040

Gene: TM1040_1558: hypothetical protein
 
Silicibacter pomeroyi DSS-3

Gene: SPO2916: hypothetical protein
 
Roseobacter sp. MED193

Gene: MED193_05944: hypothetical protein
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
Jann_2972
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_2972: hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
PF04828
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2198: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Paracoccus denitrificans PD1222

Gene: Pden_2869: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Jannaschia sp. CCS1

Gene: Jann_2973: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_20543: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13576: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09329: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_06255: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Roseovarius nubinhibens ISM

Gene: ISM_02050: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Roseovarius sp. 217

Gene: ROS217_11356: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Sulfitobacter sp. EE-36

Gene: EE36_03648: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Silicibacter TM1040

Gene: TM1040_1560: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2917: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Roseobacter sp. MED193

Gene: MED193_05954: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Jann_2974
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_2974: hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
acdA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2197: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Paracoccus denitrificans PD1222

Gene: Pden_2870: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Jannaschia sp. CCS1

Gene: Jann_2975: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_20538: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13571: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09334: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_06260: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Roseovarius nubinhibens ISM

Gene: ISM_02055: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Roseovarius sp. 217

Gene: ROS217_11361: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Sulfitobacter sp. EE-36

Gene: EE36_03653: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Silicibacter TM1040

Gene: TM1040_1561: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2918: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Roseobacter sp. MED193

Gene: MED193_05959: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0671: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_06074: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Jann_2976
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_2976: hypothetical protein
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
acdB
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2196: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Paracoccus denitrificans PD1222

Gene: Pden_2871: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Jannaschia sp. CCS1

Gene: Jann_2977: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_20533: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13561: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09339: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_06265: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Roseovarius nubinhibens ISM

Gene: ISM_02060: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Roseovarius sp. 217

Gene: ROS217_11366: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Sulfitobacter sp. EE-36

Gene: EE36_03663: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Silicibacter TM1040

Gene: TM1040_1562: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Silicibacter pomeroyi DSS-3

Gene: SPO2920: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Roseobacter sp. MED193

Gene: MED193_05969: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0672: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_06059: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
acdL
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO2380: acyl-CoA dehydrogenase
 
Roseobacter sp. MED193
*
Hyphomonas neptunium ATCC 15444

Site:
position = -56
score = 5.76004
sequence = GCTTACGTGAACGTAAGC

Site:
position = -50
score = 4.57942
sequence = GTGAACGTAAGCGGCAAC

Gene: HNE_0669: acyl-CoA dehydrogenase
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_06084: acyl-CoA dehydrogenase
acyl-CoA dehydrogenase
OA2633_06079
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_06079: hypothetical protein
hypothetical protein
OA2633_06069
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_06069: hypothetical protein
hypothetical protein
OA2633_06064
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_06064: hypothetical protein
hypothetical protein
acdA3
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_17767: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_11351: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_1559: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Silicibacter pomeroyi DSS-3

Gene: SPO0582: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Roseobacter sp. MED193

Gene: MED193_05949: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
SPO2919
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO2919: hypothetical protein
 
Roseobacter sp. MED193

Gene: MED193_05964: hypothetical protein
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
RB2654_20548
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_20548: hypothetical protein
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
HNE_0670
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0670: hypothetical protein
 
Oceanicaulis alexandrii HTCC2633
hypothetical protein
 
CRON 3.
acdA2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_0361: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Silicibacter pomeroyi DSS-3

Gene: SPO0773: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Roseobacter sp. MED193

Gene: MED193_10206: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
*
Hyphomonas neptunium ATCC 15444

Site:
position = -88
score = 5.43157
sequence = GTTTACGTCAACGGAAGG

Gene: HNE_2706: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Oceanicaulis alexandrii HTCC2633
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
CRON 4.
HNE_2820
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
*
Hyphomonas neptunium ATCC 15444

Site:
position = -64
score = 5.18713
sequence = GTTGACGTGAACGTCTGG

Gene: HNE_2820: oxidoreductase, short chain dehydrogenase/reductase family
 
Oceanicaulis alexandrii HTCC2633
oxidoreductase, short chain dehydrogenase/reductase family
 
CRON 5.
eftB
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2550: Electron transfer flavoprotein, beta subunit
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
*
Hyphomonas neptunium ATCC 15444

Site:
position = -98
score = 5.00765
sequence = CCTCACGTAAGCGTCAAG

Gene: HNE_3471: Electron transfer flavoprotein, beta subunit
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_12355: Electron transfer flavoprotein, beta subunit
Electron transfer flavoprotein, beta subunit
etfA
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2551: Electron transfer flavoprotein, alpha subunit
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3470: Electron transfer flavoprotein, alpha subunit
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_12350: Electron transfer flavoprotein, alpha subunit
Electron transfer flavoprotein, alpha subunit
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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