Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 59 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 9 3
Acidovorax sp. JS42 11 4
Comamonas testosteroni KF-1 15 5
Delftia acidovorans SPH-1 15 4
Polaromonas naphthalenivorans CJ2 12 5
Polaromonas sp. JS666 13 5
Rhodoferax ferrireducens DSM 15236 11 4
Variovorax paradoxus S110 6 1
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6 9 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
paaI
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42

Gene: Ajs_1073: Phenylacetic acid degradation protein paaI
*
Comamonas testosteroni KF-1

Site:
position = -50
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Site:
position = -44
score = 5.34588
sequence = GTTTACGTAAACGTCAAT

Gene: CtesDRAFT_4405: Phenylacetic acid degradation protein paaI
*
Delftia acidovorans SPH-1

Site:
position = -37
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Site:
position = -31
score = 4.984
sequence = GTTTACGTAAACGTAATT

Gene: Daci_5992: Phenylacetic acid degradation protein paaI
*
Polaromonas naphthalenivorans CJ2

Site:
position = -68
score = 5.14609
sequence = GTTTACGTAAACGTCAAG

Site:
position = -74
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Gene: Pnap_0454: Phenylacetic acid degradation protein paaI
*
Polaromonas sp. JS666

Site:
position = -135
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Site:
position = -129
score = 5.34588
sequence = GTTTACGTAAACGTCAAT

Gene: Bpro_4191: Phenylacetic acid degradation protein paaI
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
*
Leptothrix cholodnii SP-6

Site:
position = -30
score = 5.2259
sequence = GTTAACGTAAACGTCAAT

Site:
position = -36
score = 6.59853
sequence = ATTGACGTTAACGTAAAC

Gene: Lcho_4202: Phenylacetic acid degradation protein paaI
Phenylacetic acid degradation protein paaI
liuA
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -102
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Site:
position = -96
score = 4.78422
sequence = GTTTACGTAAACGTAATG

Gene: Aave_4371: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Acidovorax sp. JS42

Site:
position = -134
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Site:
position = -128
score = 4.78422
sequence = GTTTACGTAAACGTAATA

Gene: Ajs_3779: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4406: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Delftia acidovorans SPH-1

Gene: Daci_5991: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0455: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Polaromonas sp. JS666

Gene: Bpro_4190: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3842: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Variovorax paradoxus S110

Gene: Vapar_4724: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1333: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3360: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Leptothrix cholodnii SP-6

Gene: Lcho_2119: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
cah
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4370: Carbonic anhydrase (EC 4.2.1.1)
 
Acidovorax sp. JS42

Gene: Ajs_3778: Carbonic anhydrase (EC 4.2.1.1)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4407: Carbonic anhydrase (EC 4.2.1.1)
 
Delftia acidovorans SPH-1

Gene: Daci_5990: Carbonic anhydrase (EC 4.2.1.1)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0456: Carbonic anhydrase (EC 4.2.1.1)
 
Polaromonas sp. JS666

Gene: Bpro_4189: Carbonic anhydrase (EC 4.2.1.1)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3841: Carbonic anhydrase (EC 4.2.1.1)
 
Variovorax paradoxus S110

Gene: Vapar_4734: Carbonic anhydrase (EC 4.2.1.1)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1332: Carbonic anhydrase (EC 4.2.1.1)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3369: Carbonic anhydrase (EC 4.2.1.1)
 
Leptothrix cholodnii SP-6

Gene: Lcho_4203: Carbonic anhydrase (EC 4.2.1.1)
Carbonic anhydrase (EC 4.2.1.1)
aceK
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4369: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Acidovorax sp. JS42

Gene: Ajs_3777: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4408: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Delftia acidovorans SPH-1

Gene: Daci_5989: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0457: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Polaromonas sp. JS666

Gene: Bpro_4188: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3840: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Variovorax paradoxus S110

Gene: Vapar_4733: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3368: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Leptothrix cholodnii SP-6

Gene: Lcho_4204: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
ivdA
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4368: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Acidovorax sp. JS42

Gene: Ajs_3776: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4409: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Delftia acidovorans SPH-1

Gene: Daci_5988: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0458: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Polaromonas sp. JS666

Gene: Bpro_4187: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3839: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Variovorax paradoxus S110

Gene: Vapar_4732: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1331: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3367: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Leptothrix cholodnii SP-6

Gene: Lcho_4205: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Daci_5987
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4411: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Delftia acidovorans SPH-1

Gene: Daci_5987: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Aave_4367
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4367: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Acidovorax sp. JS42

Gene: Ajs_3775: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4412: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Delftia acidovorans SPH-1

Gene: Daci_5986: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4186: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
ivdC
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4365: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Acidovorax sp. JS42

Gene: Ajs_3774: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4413: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Delftia acidovorans SPH-1

Gene: Daci_5985: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0459: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Polaromonas sp. JS666

Gene: Bpro_4185: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3838: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Variovorax paradoxus S110

Gene: Vapar_4730: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6

Gene: Lcho_4207: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Daci_5984
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4419: Alpha/beta hydrolase fold (EC 3.8.1.5)
 
Delftia acidovorans SPH-1

Gene: Daci_5984: Alpha/beta hydrolase fold (EC 3.8.1.5)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_2846: Alpha/beta hydrolase fold (EC 3.8.1.5)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Alpha/beta hydrolase fold (EC 3.8.1.5)
CtesDRAFT_4410
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4410: hypothetical protein
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
hypothetical protein
Aave_4366
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4366: acyltransferase 3
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
acyltransferase 3
Lcho_4206
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3366: Putative amino acid efflux transporter, Rht family
 
Leptothrix cholodnii SP-6

Gene: Lcho_4206: Putative amino acid efflux transporter, Rht family
Putative amino acid efflux transporter, Rht family
liuR
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -70
score = 4.92901
sequence = ATTGACGTGCGCGTCAAC

Gene: Aave_4372: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Acidovorax sp. JS42

Site:
position = -59
score = 5.95145
sequence = ATTGACGTTCACGTCAAC

Gene: Ajs_3780: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Comamonas testosteroni KF-1

Site:
position = -74
score = 6.59853
sequence = ATTGACGTTAACGTAAAC

Site:
position = -68
score = 5.01675
sequence = GTTAACGTAAACGTCAGT

Gene: CtesDRAFT_4404: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Delftia acidovorans SPH-1

Site:
position = -46
score = 6.40852
sequence = ATTGACGTTAACGTCAAC

Gene: Daci_5993: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Polaromonas naphthalenivorans CJ2

Site:
position = -80
score = 5.12695
sequence = GTTTACGTAAACGTAAGA

Site:
position = -86
score = 6.31154
sequence = TTTGACGTTTACGTAAAC

Gene: Pnap_0453: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Polaromonas sp. JS666

Site:
position = -111
score = 6.31154
sequence = TTTGACGTTTACGTAAAC

Gene: Bpro_4192: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -86
score = 5.34588
sequence = GTTTACGTAAACGTCAAT

Site:
position = -92
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Gene: Rfer_3843: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Variovorax paradoxus S110

Site:
position = -115
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Gene: Vapar_4735: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
*
Leptothrix cholodnii SP-6

Site:
position = -73
score = 5.68149
sequence = ACTTACGTTTACGTCAAC

Gene: Lcho_4201: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Vapar_4731
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_4731: peptidase M20
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
peptidase M20
 
CRON 2.
mcm
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -75
score = 4.78422
sequence = GTTTACGTAAACGTAATA

Site:
position = -81
score = 6.58437
sequence = GTTGACGTTTACGTAAAC

Gene: Pnap_3524: Methylmalonyl-CoA mutase (EC 5.4.99.2)
*
Polaromonas sp. JS666

Site:
position = -41
score = 5.72216
sequence = GTTTACGTAAACGTCAAC

Site:
position = -47
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Gene: Bpro_4054: Methylmalonyl-CoA mutase (EC 5.4.99.2)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -85
score = 5.14609
sequence = GTTTACGTAAACGTCAAG

Site:
position = -91
score = 6.63969
sequence = ATTGACGTTTACGTAAAC

Gene: Rfer_3612: Methylmalonyl-CoA mutase (EC 5.4.99.2)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0903: Methylmalonyl-CoA mutase (EC 5.4.99.2)
*
Leptothrix cholodnii SP-6

Site:
position = -72
score = 5.34588
sequence = GTTTACGTAAACGTCAAT

Site:
position = -78
score = 5.72995
sequence = TATGACGTTTACGTAAAC

Gene: Lcho_3844: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Methylmalonyl-CoA mutase (EC 5.4.99.2)
 
CRON 3.
etfB
 2
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2168: Electron transfer flavoprotein, beta subunit

Gene: Aave_4307: Electron transfer flavoprotein, beta subunit
*2
Acidovorax sp. JS42

Gene: Ajs_3731: Electron transfer flavoprotein, beta subunit

Site:
position = -45
score = 5.14609
sequence = GTTTACGTAAACGTCAAG

Gene: Ajs_2810: Electron transfer flavoprotein, beta subunit
*2
Comamonas testosteroni KF-1

Gene: CtesDRAFT_2699: Electron transfer flavoprotein, beta subunit

Site:
position = -44
score = 5.34588
sequence = GTTTACGTAAACGTCAAT

Gene: CtesDRAFT_0547: Electron transfer flavoprotein, beta subunit
*2
Delftia acidovorans SPH-1

Gene: Daci_1402: Electron transfer flavoprotein, beta subunit

Site:
position = -44
score = 5.34588
sequence = GTTTACGTAAACGTCAAT

Site:
position = -50
score = 5.15029
sequence = ATTTCGGTTTACGTAAAC

Gene: Daci_2390: Electron transfer flavoprotein, beta subunit
*2
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2131: Electron transfer flavoprotein, beta subunit

Site:
position = -44
score = 5.09697
sequence = GTTTACGTCAACGTCAAT

Site:
position = -50
score = 5.62617
sequence = GCTTACGTTTACGTCAAC

Gene: Pnap_1223: Electron transfer flavoprotein, beta subunit
*
Polaromonas sp. JS666

Site:
position = -40
score = 5.09697
sequence = GTTTACGTCAACGTCAAT

Site:
position = -46
score = 5.62617
sequence = GCTTACGTTTACGTCAAC

Gene: Bpro_3143: Electron transfer flavoprotein, beta subunit
*2
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_4166: Electron transfer flavoprotein, beta subunit

Site:
position = -77
score = 5.46063
sequence = GTTGACGTGCACGTCAAC

Gene: Rfer_1957: Electron transfer flavoprotein, beta subunit
 
Variovorax paradoxus S110

Gene: Vapar_3374: Electron transfer flavoprotein, beta subunit
 2
Verminephrobacter eiseniae EF01-2

Gene: Veis_4693: Electron transfer flavoprotein, beta subunit

Gene: Veis_2093: Electron transfer flavoprotein, beta subunit
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1296: Electron transfer flavoprotein, beta subunit
 4
Leptothrix cholodnii SP-6

Gene: Lcho_2540: Electron transfer flavoprotein, beta subunit

Gene: Lcho_0857: Electron transfer flavoprotein, beta subunit

Gene: Lcho_1194: Electron transfer flavoprotein, beta subunit

Gene: Lcho_3598: Electron transfer flavoprotein, beta subunit
Electron transfer flavoprotein, beta subunit
etfA
 2
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2169: Electron transfer flavoprotein, alpha subunit

Gene: Aave_4306: Electron transfer flavoprotein, alpha subunit
 2
Acidovorax sp. JS42

Gene: Ajs_3730: Electron transfer flavoprotein, alpha subunit

Gene: Ajs_2809: Electron transfer flavoprotein, alpha subunit
 2
Comamonas testosteroni KF-1

Gene: CtesDRAFT_2698: Electron transfer flavoprotein, alpha subunit

Gene: CtesDRAFT_0548: Electron transfer flavoprotein, alpha subunit
 2
Delftia acidovorans SPH-1

Gene: Daci_1403: Electron transfer flavoprotein, alpha subunit

Gene: Daci_2391: Electron transfer flavoprotein, alpha subunit
 2
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2132: Electron transfer flavoprotein, alpha subunit

Gene: Pnap_1224: Electron transfer flavoprotein, alpha subunit
 
Polaromonas sp. JS666

Gene: Bpro_3142: Electron transfer flavoprotein, alpha subunit
 2
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_4165: Electron transfer flavoprotein, alpha subunit

Gene: Rfer_1958: Electron transfer flavoprotein, alpha subunit
 
Variovorax paradoxus S110

Gene: Vapar_3373: Electron transfer flavoprotein, alpha subunit
 2
Verminephrobacter eiseniae EF01-2

Gene: Veis_4692: Electron transfer flavoprotein, alpha subunit

Gene: Veis_2092: Electron transfer flavoprotein, alpha subunit
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1297: Electron transfer flavoprotein, alpha subunit
 4
Leptothrix cholodnii SP-6

Gene: Lcho_2539: Electron transfer flavoprotein, alpha subunit

Gene: Lcho_0858: Electron transfer flavoprotein, alpha subunit

Gene: Lcho_1195: Electron transfer flavoprotein, alpha subunit

Gene: Lcho_3599: Electron transfer flavoprotein, alpha subunit
Electron transfer flavoprotein, alpha subunit
livK
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0549: Branched-chain amino acid ABC transport system, periplasmic binding component
 
Delftia acidovorans SPH-1

Gene: Daci_2392: Branched-chain amino acid ABC transport system, periplasmic binding component
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1
 
Leptothrix cholodnii SP-6
Branched-chain amino acid ABC transport system, periplasmic binding component
acdH
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2170: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Acidovorax sp. JS42

Gene: Ajs_2808: Acyl-CoA dehydrogenase (EC 1.3.99.3)
*
Comamonas testosteroni KF-1

Site:
position = -166
score = 5.14609
sequence = GTTTACGTAAACGTCAAA

Site:
position = -172
score = 5.06344
sequence = CATTCCGTTTACGTAAAC

Gene: CtesDRAFT_1104: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Delftia acidovorans SPH-1

Gene: Daci_2393: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1225: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Polaromonas sp. JS666

Gene: Bpro_3141: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1959: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 2
Variovorax paradoxus S110

Gene: Vapar_3372: Acyl-CoA dehydrogenase (EC 1.3.99.3)

Gene: Vapar_4282: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2091: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1298: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Leptothrix cholodnii SP-6

Gene: Lcho_2538: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
CRON 4.
paaH
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -42
score = 6.44968
sequence = ATTGACGTTTACGTCAAC

Gene: Aave_2867: 3-hydroxyacyl-CoA dehydrogenase
*
Acidovorax sp. JS42

Site:
position = -31
score = 5.29952
sequence = GTTTACGTTAACGTAACT

Site:
position = -37
score = 6.062
sequence = ATTAACGTTTACGTTAAC

Gene: Ajs_1606: 3-hydroxyacyl-CoA dehydrogenase
*
Comamonas testosteroni KF-1

Site:
position = -48
score = 6.44968
sequence = ATTGACGTTTACGTCAAC

Site:
position = -42
score = 5.09697
sequence = GTTTACGTCAACGTCAAT

Gene: CtesDRAFT_5453: 3-hydroxyacyl-CoA dehydrogenase
*
Delftia acidovorans SPH-1

Site:
position = -42
score = 5.55256
sequence = AGTTACGTTTACGTCAAC

Gene: Daci_4744: 3-hydroxyacyl-CoA dehydrogenase
*
Polaromonas naphthalenivorans CJ2

Site:
position = -80
score = 5.46161
sequence = GTTGACGTAAACGTCAAA

Site:
position = -86
score = 6.14145
sequence = ATTGACGTTGACGTAAAC

Gene: Pnap_1609: 3-hydroxyacyl-CoA dehydrogenase
*
Polaromonas sp. JS666

Site:
position = -63
score = 5.47325
sequence = GTTTACGTCAACGTCAAC

Site:
position = -69
score = 6.44968
sequence = ATTGACGTTTACGTCAAC

Gene: Bpro_3093: 3-hydroxyacyl-CoA dehydrogenase
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -33
score = 5.66139
sequence = GTTTACGTTAACGTCAAT

Site:
position = -39
score = 6.4975
sequence = ATTGACGTTTACGTTAAC

Gene: Rfer_2204: 3-hydroxyacyl-CoA dehydrogenase
 
Variovorax paradoxus S110

Gene: Vapar_1765: 3-hydroxyacyl-CoA dehydrogenase
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2552: 3-hydroxyacyl-CoA dehydrogenase
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2489: 3-hydroxyacyl-CoA dehydrogenase
*
Leptothrix cholodnii SP-6

Site:
position = -93
score = 5.47325
sequence = GTTTACGTCAACGTCAAC

Site:
position = -99
score = 6.44968
sequence = ATTGACGTTTACGTCAAC

Gene: Lcho_2559: 3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD