Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuR - Psychromonadaceae/Aeromonadales

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 20 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Psychromonas ingrahamii 37
Psychromonas sp. CNPT3
Moritella sp. PE36
Aeromonas hydrophila subsp. hydrophila ATCC 7966 23 7
Aeromonas salmonicida subsp. salmonicida A449 22 7
Tolumonas auensis DSM 9187
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ivdA
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -89
score = 5.02754
sequence = CCTTACCCAAACGTCAAC

Gene: AHA_2143: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -89
score = 5.02754
sequence = CCTTACCCAAACGTCAAC

Gene: ASA_2159: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
 
Tolumonas auensis DSM 9187
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
 
CRON 2.
prpB
 
Psychromonas ingrahamii 37

Gene: Ping_1869: Methylisocitrate lyase (EC 4.1.3.30)
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_01055: Methylisocitrate lyase (EC 4.1.3.30)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -60
score = 5.76419
sequence = ATTGACGTTAACGTAAAC

Site:
position = -54
score = 4.56075
sequence = GTTAACGTAAACGTGATA

Gene: AHA_2265: Methylisocitrate lyase (EC 4.1.3.30)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -54
score = 4.56075
sequence = GTTAACGTAAACGTGATA

Site:
position = -60
score = 5.76419
sequence = ATTGACGTTAACGTAAAC

Gene: ASA_2041: Methylisocitrate lyase (EC 4.1.3.30)
 
Tolumonas auensis DSM 9187
Methylisocitrate lyase (EC 4.1.3.30)
prpC
 
Psychromonas ingrahamii 37

Gene: Ping_1868: 2-methylcitrate synthase (EC 2.3.3.5)
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_01050: 2-methylcitrate synthase (EC 2.3.3.5)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2266: 2-methylcitrate synthase (EC 2.3.3.5)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_2040: 2-methylcitrate synthase (EC 2.3.3.5)
 
Tolumonas auensis DSM 9187
2-methylcitrate synthase (EC 2.3.3.5)
prpD
 
Psychromonas ingrahamii 37

Gene: Ping_1572: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2267: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_2039: 2-methylcitrate dehydratase (EC 4.2.1.79)
 
Tolumonas auensis DSM 9187
2-methylcitrate dehydratase (EC 4.2.1.79)
 
CRON 3.
ivdB
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -159
score = 6.17952
sequence = GTTTACGTTAGCGTAAAC

Site:
position = -153
score = 4.75085
sequence = GTTAGCGTAAACGTAAAT

Gene: AHA_2079: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -158
score = 6.17952
sequence = GTTTACGTTAGCGTAAAC

Site:
position = -152
score = 4.75085
sequence = GTTAGCGTAAACGTAAAT

Gene: ASA_1913: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
 
Tolumonas auensis DSM 9187
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
ivdC
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2080: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1914: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
 
Tolumonas auensis DSM 9187
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
ivdD
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2081: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1915: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
 
Tolumonas auensis DSM 9187
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
ivdE
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2082: Enoyl-CoA hydratase/isomerase family protein
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1916: Enoyl-CoA hydratase/isomerase family protein
 
Tolumonas auensis DSM 9187
Enoyl-CoA hydratase/isomerase family protein
ivdF
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2083: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1917: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
 
Tolumonas auensis DSM 9187
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
ivdG
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2084: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1918: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Tolumonas auensis DSM 9187
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
CRON 4.
liuA
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_13674: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -111
score = 4.75085
sequence = ATTTACGTTTACGCTAAC

Site:
position = -105
score = 6.17952
sequence = GTTTACGCTAACGTAAAC

Gene: AHA_2078: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -118
score = 4.75085
sequence = ATTTACGTTTACGCTAAC

Site:
position = -112
score = 6.17952
sequence = GTTTACGCTAACGTAAAC

Gene: ASA_1912: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Tolumonas auensis DSM 9187
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
liuB
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_13679: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2077: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1911: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Tolumonas auensis DSM 9187
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_13689: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2076: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1910: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Tolumonas auensis DSM 9187
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 2
Moritella sp. PE36

Gene: PE36_13694: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)

Gene: PE36_13699: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2075: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1909: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Tolumonas auensis DSM 9187
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuE
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_13704: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2074: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1908: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Tolumonas auensis DSM 9187
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuR
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
*2
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2073: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

Site:
position = -17
score = 5.02754
sequence = GTTGACGTTTGGGTAAGG

Gene: AHA_2141: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*2
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1907: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

Site:
position = -61
score = 5.02754
sequence = GTTGACGTTTGGGTAAGG

Gene: ASA_2160: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Tolumonas auensis DSM 9187
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
ASA_1906
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2072: Periplasmic binding protein
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1906: Periplasmic binding protein
 
Tolumonas auensis DSM 9187
Periplasmic binding protein
ASA_1905
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_13092: hypothetical protein
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_2071: hypothetical protein
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1905: hypothetical protein
 
Tolumonas auensis DSM 9187
hypothetical protein
 
CRON 5.
etfD
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36

Gene: PE36_13919: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*2
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -58
score = 6.33972
sequence = CTTTACGTTTACGTAAAC

Gene: AHA_1975: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Gene: AHA_1974: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -58
score = 6.33972
sequence = CTTTACGTTTACGTAAAC

Gene: ASA_1855: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Tolumonas auensis DSM 9187
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
CRON 6.
etfB
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -75
score = 6.33972
sequence = GTTTACGTAAACGTAAAG

Gene: AHA_1976: Electron transfer flavoprotein, beta subunit
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -86
score = 6.33972
sequence = GTTTACGTAAACGTAAAG

Gene: ASA_1856: Electron transfer flavoprotein, beta subunit
 
Tolumonas auensis DSM 9187
Electron transfer flavoprotein, beta subunit
etfA
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_1977: Electron transfer flavoprotein, alpha subunit
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_1857: Electron transfer flavoprotein, alpha subunit
 
Tolumonas auensis DSM 9187
Electron transfer flavoprotein, alpha subunit
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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