Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 65 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 14 4
Alteromonas macleodii 'Deep ecotype' 12 5
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H 15 5
Alteromonadales bacterium TW-7 28 10
Pseudoalteromonas haloplanktis TAC125 26 9
Pseudoalteromonas tunicata D2 26 9
Idiomarina baltica OS145 14 4
Idiomarina loihiensis L2TR 13 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
liuR
*
Pseudoalteromonas atlantica T6c

Site:
position = -86
score = 6.07242
sequence = CTTTACGTAAACGTAAAG

Site:
position = -109
score = 5.68781
sequence = CTTTACCTTTACGTTAAG

Gene: Patl_2924: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -142
score = 5.51502
sequence = ATTAACGTTAACGTAAAC

Site:
position = -164
score = 5.91288
sequence = CTTTACCTTAACGTAAAA

Gene: MADE_02411: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -73
score = 6.38125
sequence = CTTTACGTTAACGTAAAC

Site:
position = -67
score = 4.66107
sequence = GTTAACGTAAACTTAATA

Gene: CPS_1604: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Alteromonadales bacterium TW-7

Site:
position = -59
score = 6.04884
sequence = CTTTACCTTTACGTAAAC

Gene: ATW7_12583: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -60
score = 6.04884
sequence = CTTTACCTTTACGTAAAC

Gene: PSHAa1453: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Pseudoalteromonas tunicata D2

Site:
position = -55
score = 6.04884
sequence = CTTTACCTTTACGTAAAC

Gene: PTD2_19757: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Idiomarina baltica OS145

Site:
position = -61
score = 6.38125
sequence = CTTTACGTTAACGTAAAC

Gene: OS145_12909: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Idiomarina loihiensis L2TR

Site:
position = -62
score = 6.38125
sequence = CTTTACGTTAACGTAAAC

Gene: IL0873: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2925: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02412: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1603: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12578: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1452: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19762: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Idiomarina baltica OS145

Gene: OS145_12904: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Idiomarina loihiensis L2TR

Gene: IL0874: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
liuB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2926: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02413: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1602: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12573: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1451: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19767: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Idiomarina baltica OS145

Gene: OS145_12899: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Idiomarina loihiensis L2TR

Gene: IL0875: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2927: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02414: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1601: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12568: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1450: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19772: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Idiomarina baltica OS145

Gene: OS145_12894: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Idiomarina loihiensis L2TR

Gene: IL0876: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2928: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02415: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1600: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12563: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1449: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19777: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Idiomarina baltica OS145

Gene: OS145_12889: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Idiomarina loihiensis L2TR

Gene: IL0877: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuE
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2929: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02416: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1599: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12558: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1448: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19782: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Idiomarina baltica OS145

Gene: OS145_12884: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Idiomarina loihiensis L2TR

Gene: IL0878: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
aacS
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145

Gene: OS145_12879: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
 
Idiomarina loihiensis L2TR

Gene: IL0879: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
IL0880
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145

Gene: OS145_12874: Sensory box/GGDEF family protein
 
Idiomarina loihiensis L2TR

Gene: IL0880: Sensory box/GGDEF family protein
Sensory box/GGDEF family protein
etfD
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2147: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -138
score = 5.6789
sequence = GTTGACGTAAACGTCAAC

Site:
position = -176
score = 6.17731
sequence = GTTGACGTTAACGTAAAC

Gene: MADE_00995: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006517: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Colwellia psychrerythraea 34H

Site:
position = -197
score = 4.75482
sequence = GTCAACGTCAACGTAAAC

Site:
position = -203
score = 5.55839
sequence = CTTTACGTCAACGTCAAC

Gene: CPS_3686: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Alteromonadales bacterium TW-7

Site:
position = -191
score = 4.71441
sequence = CCTAACGTGTACGTCAAC

Site:
position = -142
score = 5.6789
sequence = GTTGACGTAAACGTCAAC

Gene: ATW7_13183: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -141
score = 4.6074
sequence = ATTGACGTAAACATCAAC

Site:
position = -190
score = 4.82848
sequence = GCTGACGTGCACGTCAAC

Gene: PSHAa1619: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Pseudoalteromonas tunicata D2

Site:
position = -104
score = 5.6789
sequence = GTTGACGTAAACGTCAAC

Gene: PTD2_19430: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Idiomarina baltica OS145

Gene: OS145_12869: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
Idiomarina loihiensis L2TR

Gene: IL0881: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
liuF
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1620: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01941: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006427: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
 
Colwellia psychrerythraea 34H

Gene: CPS_1598: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12553: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1447: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19787: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
liuG
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1619: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01940: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006422: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
 
Colwellia psychrerythraea 34H

Gene: CPS_1597: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12548: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1446: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19792: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
 
CRON 2.
ivdA
*
Pseudoalteromonas atlantica T6c

Site:
position = -188
score = 5.22443
sequence = CTTAACGTAAAGGTAAAG

Site:
position = -211
score = 6.26839
sequence = CTTTACGTTTACGTAAAG

Gene: Patl_2923: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -76
score = 5.66322
sequence = TTTTACGTTAAGGTAAAG

Site:
position = -98
score = 5.63225
sequence = GTTTACGTTAACGTTAAT

Gene: MADE_02410: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -91
score = 4.83626
sequence = GTTGACGTAAACTTAAAT

Gene: CPS_1605: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
*
Alteromonadales bacterium TW-7

Site:
position = -116
score = 5.98114
sequence = GTTGACGTTAGCGTAAAC

Gene: ATW7_12588: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -113
score = 5.29397
sequence = ATTTACGTTGGCGTAAAC

Gene: PSHAa1454: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
*
Pseudoalteromonas tunicata D2

Site:
position = -66
score = 5.29397
sequence = ATTTACGTTGGCGTAAAC

Gene: PTD2_19752: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
*
Idiomarina baltica OS145

Site:
position = -34
score = 6.37434
sequence = GTTTACGTTAACGTAAAG

Gene: OS145_12914: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
*
Idiomarina loihiensis L2TR

Site:
position = -34
score = 6.37434
sequence = GTTTACGTTAACGTAAAG

Gene: IL0872: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ivdB
*
Pseudoalteromonas atlantica T6c

Site:
position = -102
score = 5.36091
sequence = ACTGACGTTAACGTAAAG

Gene: Patl_0948: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7

Gene: ATW7_12593: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1455: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19747: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
 
Idiomarina baltica OS145

Gene: OS145_12924: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
 
Idiomarina loihiensis L2TR

Gene: IL0870: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
ivdC
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0949: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -32
score = 5.91484
sequence = CTTTACGTTTACGTAAGG

Gene: MADE_01905: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_0658: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12598: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1456: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19742: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
 
Idiomarina baltica OS145

Gene: OS145_12929: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
 
Idiomarina loihiensis L2TR

Gene: IL0869: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
ivdD
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_0657: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12603: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1457: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19737: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Enoyl-CoA hydratase (EC 4.2.1.17)
ivdE
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0950: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01906: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7

Gene: ATW7_12608: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1458: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19732: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
 
Idiomarina baltica OS145

Gene: OS145_12934: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
 
Idiomarina loihiensis L2TR

Gene: IL0868: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
ivdF
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0951: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_3424: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12613: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1459: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19727: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
 
Idiomarina baltica OS145

Gene: OS145_12939: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
 
Idiomarina loihiensis L2TR

Gene: IL0867: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
ivdG
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0952: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1608: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12618: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1460: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19722: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Idiomarina baltica OS145

Gene: OS145_12944: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
Idiomarina loihiensis L2TR

Gene: IL0866: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
 
CRON 3.
Patl_0524
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0524: hypothetical protein
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_00720: hypothetical protein
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100007037: hypothetical protein
 
Colwellia psychrerythraea 34H

Gene: CPS_4953: hypothetical protein
*
Alteromonadales bacterium TW-7

Site:
position = -131
score = 5.80836
sequence = GTTTACGTAAACGTTAAC

Gene: ATW7_03902: hypothetical protein
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -129
score = 4.57433
sequence = CTTTACTTAAAAGTTAAC

Gene: PSHAa0586: hypothetical protein
*
Pseudoalteromonas tunicata D2

Site:
position = -140
score = 5.63759
sequence = GTTAACCTTTACGTAAAC

Gene: PTD2_08574: hypothetical protein
 
Idiomarina baltica OS145

Gene: OS145_00185: hypothetical protein
 
Idiomarina loihiensis L2TR

Gene: IL1179: hypothetical protein
hypothetical protein
Patl_0525
 
Pseudoalteromonas atlantica T6c

Gene: Patl_0525: Sodium:solute symporter family protein
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_00721: Sodium:solute symporter family protein
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100007042: Sodium:solute symporter family protein
 
Colwellia psychrerythraea 34H

Gene: CPS_4952: Sodium:solute symporter family protein
 
Alteromonadales bacterium TW-7

Gene: ATW7_03907: Sodium:solute symporter family protein
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0587: Sodium:solute symporter family protein
 
Pseudoalteromonas tunicata D2

Gene: PTD2_08579: Sodium:solute symporter family protein
 
Idiomarina baltica OS145

Gene: OS145_00190: Sodium:solute symporter family protein
 
Idiomarina loihiensis L2TR

Gene: IL1178: Sodium:solute symporter family protein
Sodium:solute symporter family protein
 
CRON 4.
tyrP
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7

Gene: ATW7_05466: Tyrosine-specific transport protein (HAAAP family)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2117: Tyrosine-specific transport protein (HAAAP family)
*
Pseudoalteromonas tunicata D2

Site:
position = -54
score = 5.97662
sequence = CTTTACGTTTACGTTAAC

Gene: PTD2_03281: Tyrosine-specific transport protein (HAAAP family)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Tyrosine-specific transport protein (HAAAP family)
 
CRON 5.
acdH
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1688: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02616: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100000785: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Colwellia psychrerythraea 34H
*
Alteromonadales bacterium TW-7

Site:
position = -123
score = 5.3686
sequence = GTTTACGTTCGAGTAAAG

Gene: ATW7_02937: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -122
score = 6.17516
sequence = GTTTACGTTCACGTAAAG

Gene: PSHAb0374: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_02811: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
CRON 6.
gltB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3748: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01631: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100000995: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
 
Colwellia psychrerythraea 34H

Gene: CPS_4501: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
*
Alteromonadales bacterium TW-7

Site:
position = -277
score = 6.33074
sequence = GTTTACGTTTACGTAAAC

Gene: ATW7_06903: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
 
Pseudoalteromonas haloplanktis TAC125
*
Pseudoalteromonas tunicata D2

Site:
position = -291
score = 4.69771
sequence = GTTTACGTAAACTTACTC

Site:
position = -297
score = 6.33074
sequence = GTTTACGTTTACGTAAAC

Gene: PTD2_10749: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
 
Idiomarina baltica OS145

Gene: OS145_11374: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
 
Idiomarina loihiensis L2TR

Gene: IL1075: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3749: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01630: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100001000: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
 
Colwellia psychrerythraea 34H

Gene: CPS_4502: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
 
Alteromonadales bacterium TW-7

Gene: ATW7_06908: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2

Gene: PTD2_10744: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
 
Idiomarina baltica OS145

Gene: OS145_11379: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
 
Idiomarina loihiensis L2TR

Gene: IL1074: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
 
CRON 7.
yciK
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2183: Oxidoreductase, short-chain dehydrogenase/reductase family
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01893: Oxidoreductase, short-chain dehydrogenase/reductase family
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006892: Oxidoreductase, short-chain dehydrogenase/reductase family
 
Colwellia psychrerythraea 34H

Gene: CPS_1191: Oxidoreductase, short-chain dehydrogenase/reductase family
*
Alteromonadales bacterium TW-7

Site:
position = -110
score = 5.06466
sequence = GTTAAACTTAACGTAAAG

Gene: ATW7_07484: Oxidoreductase, short-chain dehydrogenase/reductase family
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -110
score = 5.0993
sequence = GTTAAACTTAACGTAAAC

Gene: PSHAa1343: Oxidoreductase, short-chain dehydrogenase/reductase family
*
Pseudoalteromonas tunicata D2

Site:
position = -80
score = 5.35348
sequence = GTTAAAGTTAACGTAAAC

Gene: PTD2_18015: Oxidoreductase, short-chain dehydrogenase/reductase family
 
Idiomarina baltica OS145

Gene: OS145_11996: Oxidoreductase, short-chain dehydrogenase/reductase family
 
Idiomarina loihiensis L2TR

Gene: IL1040: Oxidoreductase, short-chain dehydrogenase/reductase family
Oxidoreductase, short-chain dehydrogenase/reductase family
 
CRON 8.
ldh
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2995: Leucine dehydrogenase (EC 1.4.1.9)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02824: Leucine dehydrogenase (EC 1.4.1.9)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_2904: Leucine dehydrogenase (EC 1.4.1.9)
*
Alteromonadales bacterium TW-7

Site:
position = -238
score = 5.33437
sequence = GCTAACGTAAACGTAAAG

Site:
position = -244
score = 5.31146
sequence = GGTTACGCTAACGTAAAC

Gene: ATW7_06658: Leucine dehydrogenase (EC 1.4.1.9)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -68
score = 4.99623
sequence = GTTCACGTAAGCGTAAGC

Site:
position = -74
score = 5.34753
sequence = CGTTACGTTCACGTAAGC

Gene: PSHAa1167: Leucine dehydrogenase (EC 1.4.1.9)
*
Pseudoalteromonas tunicata D2

Site:
position = -246
score = 6.10686
sequence = TTTTACGTTAACGTAAAC

Gene: PTD2_18100: Leucine dehydrogenase (EC 1.4.1.9)
*
Idiomarina baltica OS145

Site:
position = -140
score = 5.25836
sequence = GTTGCCGTTTACGTCAAC

Gene: OS145_06047: Leucine dehydrogenase (EC 1.4.1.9)
 
Idiomarina loihiensis L2TR

Gene: IL1314: Leucine dehydrogenase (EC 1.4.1.9)
Leucine dehydrogenase (EC 1.4.1.9)
 
CRON 9.
etfB
*
Pseudoalteromonas atlantica T6c

Site:
position = -32
score = 5.27622
sequence = GTTGACGTGTACGTCAAC

Gene: Patl_2146: Electron transfer flavoprotein, beta subunit
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -228
score = 6.18477
sequence = GTTTACGTTAACGTCAAC

Site:
position = -266
score = 5.87488
sequence = GTTGACGTTTACGTCAAC

Gene: MADE_00996: Electron transfer flavoprotein, beta subunit
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006522: Electron transfer flavoprotein, beta subunit
*
Colwellia psychrerythraea 34H

Site:
position = -77
score = 5.67881
sequence = GTTGACGTTGACGTAAAG

Site:
position = -83
score = 5.00218
sequence = GTTTACGTTGACGTTGAC

Gene: CPS_3687: Electron transfer flavoprotein, beta subunit
*
Alteromonadales bacterium TW-7

Site:
position = -47
score = 4.98934
sequence = GTTGACGTACACGTTAGG

Site:
position = -96
score = 5.87488
sequence = GTTGACGTTTACGTCAAC

Gene: ATW7_13178: Electron transfer flavoprotein, beta subunit
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -47
score = 4.80172
sequence = GTTGACGTGCACGTCAGC

Site:
position = -96
score = 4.80804
sequence = GTTGATGTTTACGTCAAT

Gene: PSHAa1618: Electron transfer flavoprotein, beta subunit
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19467: Electron transfer flavoprotein, beta subunit
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Electron transfer flavoprotein, beta subunit
etfA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2145: Electron transfer flavoprotein, alpha subunit
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_00997: Electron transfer flavoprotein, alpha subunit
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100006527: Electron transfer flavoprotein, alpha subunit
 
Colwellia psychrerythraea 34H

Gene: CPS_3688: Electron transfer flavoprotein, alpha subunit
 
Alteromonadales bacterium TW-7

Gene: ATW7_13173: Electron transfer flavoprotein, alpha subunit
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1617: Electron transfer flavoprotein, alpha subunit
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19472: Electron transfer flavoprotein, alpha subunit
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Electron transfer flavoprotein, alpha subunit
 
CRON 10.
bkdA1
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2036: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01954: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -235
score = 4.92769
sequence = GTTAACGTGAAGGTAAAG

Gene: CPS_1582: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
*
Alteromonadales bacterium TW-7

Site:
position = -134
score = 6.34662
sequence = CTTTACGTTAACGTAAAG

Gene: ATW7_13253: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -132
score = 6.34662
sequence = CTTTACGTTAACGTAAAG

Gene: PSHAa1632: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
*
Pseudoalteromonas tunicata D2

Site:
position = -224
score = 6.37434
sequence = GTTTACGTTAACGTAAAG

Gene: PTD2_19360: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
*
Idiomarina baltica OS145

Site:
position = -61
score = 5.6634
sequence = CTTTACGTAAAGGTAAAG

Gene: OS145_01872: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
*
Idiomarina loihiensis L2TR

Site:
position = -61
score = 5.6634
sequence = CTTTACGTAAAGGTAAAG

Gene: IL1680: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
bkdA2
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2037: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01955: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1583: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Alteromonadales bacterium TW-7

Gene: ATW7_13248: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1631: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19365: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Idiomarina baltica OS145

Gene: OS145_01867: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
 
Idiomarina loihiensis L2TR

Gene: IL1679: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
bkdB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2038: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_01956: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_1584: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Alteromonadales bacterium TW-7

Gene: ATW7_13243: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa1630: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_19370: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Idiomarina baltica OS145

Gene: OS145_01862: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
 
Idiomarina loihiensis L2TR

Gene: IL1678: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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