Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Desulfuromonadales

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Geobacter metallireducens GS-15 3 1
Geobacter sulfurreducens PCA 4 2
Geobacter uraniumreducens Rf4 3 2
Geobacter sp. FRC-32
Geobacter sp. M21 3 1
Geobacter lovleyi SZ 2 2
Pelobacter propionicus DSM 2379
Pelobacter carbinolicus str. DSM 2380 2 2
Desulfuromonas acetoxidans DSM 684
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lexA
*
Geobacter metallireducens GS-15

Site:
position = -35
score = 5.4195
sequence = GGTTGGCACATGTGAACC

Gene: Gmet_1439: SOS-response repressor and protease LexA (EC 3.4.21.88)
*2
Geobacter sulfurreducens PCA

Site:
position = -36
score = 5.6939
sequence = GGTTGACATATGTCAACC

Gene: GSU1617: SOS-response repressor and protease LexA (EC 3.4.21.88)

Site:
position = -44
score = 5.51605
sequence = GGTTGTCACATGTATACC

Gene: GSU0041: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Geobacter uraniumreducens Rf4

Site:
position = -30
score = 5.60784
sequence = GGTTATCATTTGACAACT

Gene: Gura_1142: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Geobacter sp. FRC-32
*2
Geobacter sp. M21

Gene: GM21_0518: SOS-response repressor and protease LexA (EC 3.4.21.88)

Site:
position = -33
score = 5.8435
sequence = GGTTGTCATAAGAAAACC

Site:
position = -49
score = 5.18459
sequence = GGTTGTCATTTGGTAAGG

Gene: GM21_2490: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Geobacter lovleyi SZ

Site:
position = -9
score = 5.60138
sequence = GGTAGTCATATGAATACC

Gene: Glov_1232: SOS-response repressor and protease LexA (EC 3.4.21.88)
 2
Pelobacter propionicus DSM 2379

Gene: Ppro_0192: SOS-response repressor and protease LexA (EC 3.4.21.88)

Gene: Ppro_1572: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -32
score = 4.99458
sequence = GGCAGGCATAAGATAACC

Gene: Pcar_1739: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Desulfuromonas acetoxidans DSM 684
SOS-response repressor and protease LexA (EC 3.4.21.88)
Gmet_1440
 
Geobacter metallireducens GS-15

Gene: Gmet_1440: Conserved hypothetical protein
 
Geobacter sulfurreducens PCA

Gene: GSU0042: Conserved hypothetical protein
 
Geobacter uraniumreducens Rf4

Gene: Gura_1141: Conserved hypothetical protein
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_2491: Conserved hypothetical protein
 
Geobacter lovleyi SZ
 2
Pelobacter propionicus DSM 2379

Gene: Ppro_0191: Conserved hypothetical protein

Gene: Ppro_1573: Conserved hypothetical protein
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Conserved hypothetical protein
dinB
 
Geobacter metallireducens GS-15

Gene: Gmet_1441: DNA polymerase IV (EC 2.7.7.7)
 
Geobacter sulfurreducens PCA

Gene: GSU0043: DNA polymerase IV (EC 2.7.7.7)
 
Geobacter uraniumreducens Rf4

Gene: Gura_1132: DNA polymerase IV (EC 2.7.7.7)
 
Geobacter sp. FRC-32

Gene: Geob_3171: DNA polymerase IV (EC 2.7.7.7)
 
Geobacter sp. M21

Gene: GM21_2492: DNA polymerase IV (EC 2.7.7.7)
*
Geobacter lovleyi SZ

Site:
position = -26
score = 5.65779
sequence = GGTAGTCATTTGGTAACC

Gene: Glov_1070: DNA polymerase IV (EC 2.7.7.7)
 2
Pelobacter propionicus DSM 2379

Gene: Ppro_0190: DNA polymerase IV (EC 2.7.7.7)

Gene: Ppro_1574: DNA polymerase IV (EC 2.7.7.7)
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
DNA polymerase IV (EC 2.7.7.7)
 
CRON 2.
Gura_0162
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
*
Geobacter uraniumreducens Rf4

Site:
position = -168
score = 4.83568
sequence = GGTTTTCTGATAAAAACC

Gene: Gura_0162: Predicted restriction-modification system
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -115
score = 4.77435
sequence = CGTTGTCACATGCTATCC

Gene: Pcar_0121: Predicted restriction-modification system
 
Desulfuromonas acetoxidans DSM 684
Predicted restriction-modification system
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD