Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Caulobacterales

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 47 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 15 12
Caulobacter segnis ATCC 21756 12 11
Caulobacter sp. K31 13 10
Phenylobacterium zucineum HLK1 13 10
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01078
*
Caulobacter crescentus CB15

Site:
position = -78
score = 5.41783
sequence = GTTCGTTTTTCGTTC

Gene: CC0140: ComM-related protein
*
Caulobacter segnis ATCC 21756

Site:
position = -78
score = 5.41783
sequence = GTTCGTTTTTCGTTC

Gene: Cseg_4018: ComM-related protein
*
Caulobacter sp. K31

Site:
position = -79
score = 5.41783
sequence = GTTCGTTTTTCGTTC

Gene: Caul_0179: ComM-related protein
*
Phenylobacterium zucineum HLK1

Site:
position = -80
score = 4.99223
sequence = GTTCTATTTTCGTTC

Gene: PHZ_c3480: ComM-related protein
ComM-related protein
 
CRON 2.
uvrA
*
Caulobacter crescentus CB15

Site:
position = -93
score = 5.36298
sequence = GTTCGCATCTTGTTC

Gene: CC2590: Excinuclease ABC subunit A
*
Caulobacter segnis ATCC 21756

Site:
position = -93
score = 5.36298
sequence = GTTCGCATCTTGTTC

Gene: Cseg_1102: Excinuclease ABC subunit A
*
Caulobacter sp. K31

Site:
position = -96
score = 5.0041
sequence = GTTCGCACCTTGTTC

Gene: Caul_3697: Excinuclease ABC subunit A
*
Phenylobacterium zucineum HLK1

Site:
position = -114
score = 5.08536
sequence = GTTCGCCTTGCGTTC

Gene: PHZ_c1946: Excinuclease ABC subunit A
Excinuclease ABC subunit A
 
CRON 3.
lexA
*
Caulobacter crescentus CB15

Site:
position = -2
score = 5.06535
sequence = GTTTGCGGTTTGTTC

Gene: CC1902: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Caulobacter segnis ATCC 21756

Site:
position = -36
score = 5.06535
sequence = GTTTGCGGTTTGTTC

Gene: Cseg_2189: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Caulobacter sp. K31

Site:
position = -38
score = 5.06535
sequence = GTTTGCGGTTTGTTC

Gene: Caul_2782: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Phenylobacterium zucineum HLK1

Site:
position = -31
score = 5.06535
sequence = GTTTGCGCTTTGTTC

Gene: PHZ_c1762: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
 
CRON 4.
COG5529
*
Caulobacter crescentus CB15

Site:
position = -101
score = 4.77284
sequence = GTTCCGCTTTCGTTC

Gene: CC3711: Conserved hypothetical protein
*
Caulobacter segnis ATCC 21756

Site:
position = -53
score = 4.77284
sequence = GTTCCGCTTTCGTTC

Gene: Cseg_4159: Conserved hypothetical protein
*
Caulobacter sp. K31

Site:
position = -53
score = 4.63336
sequence = GTTCTATCTTCGTTC

Gene: Caul_5071: Conserved hypothetical protein
*
Phenylobacterium zucineum HLK1

Site:
position = -41
score = 5.07451
sequence = GTTCTCTCTTCGTTC

Gene: PHZ_c3424: Conserved hypothetical protein
Conserved hypothetical protein
 
CRON 5.
nth
*
Caulobacter crescentus CB15

Site:
position = -32
score = 5.03143
sequence = GTTCTTGTTATGTTC

Gene: CC2272: Endonuclease III (EC 4.2.99.18)
*
Caulobacter segnis ATCC 21756

Site:
position = -32
score = 5.32333
sequence = GTTCCCATTATGTTC

Gene: Cseg_2927: Endonuclease III (EC 4.2.99.18)
*
Caulobacter sp. K31

Site:
position = -31
score = 5.24344
sequence = GTTCTCGTTACGTTC

Gene: Caul_1412: Endonuclease III (EC 4.2.99.18)
 
Phenylobacterium zucineum HLK1
Endonuclease III (EC 4.2.99.18)
 
CRON 6.
yoaA
*
Caulobacter crescentus CB15

Site:
position = -42
score = 4.94015
sequence = GTTCCCATTCTGTTT

Gene: CC2038: DinG family ATP-dependent helicase YoaA
*
Caulobacter segnis ATCC 21756

Site:
position = -41
score = 4.94015
sequence = GTTCCCTTTCTGTTT

Gene: Cseg_1391: DinG family ATP-dependent helicase YoaA
 
Caulobacter sp. K31

Gene: Caul_1456: DinG family ATP-dependent helicase YoaA
*
Phenylobacterium zucineum HLK1

Site:
position = -42
score = 5.15046
sequence = GTTCCCCTTCCGTTC

Gene: PHZ_c2755: DinG family ATP-dependent helicase YoaA
DinG family ATP-dependent helicase YoaA
 
CRON 7.
recA
*
Caulobacter crescentus CB15

Site:
position = -122
score = 1.84138
sequence = GAACATCTTGCGAAC

Gene: CC1087: Recombinase A
*
Caulobacter segnis ATCC 21756

Site:
position = -122
score = 1.84138
sequence = GAACATCTTGCGAAC

Gene: Cseg_1175: Recombinase A
*
Caulobacter sp. K31

Site:
position = -111
score = 0.514141
sequence = GAACATGGAACAAAC

Gene: Caul_1392: Recombinase A
*
Phenylobacterium zucineum HLK1

Site:
position = -86
score = 1.07561
sequence = GAACAAAGGAGGTAC

Gene: PHZ_c0985: Recombinase A
Recombinase A
 
CRON 8.
recN
*
Caulobacter crescentus CB15

Site:
position = -62
score = 5.23265
sequence = GATCCCGTTTCGTTC

Gene: CC1983: DNA repair protein RecN
*
Caulobacter segnis ATCC 21756

Site:
position = -62
score = 5.23265
sequence = GATCCCGTTTCGTTC

Gene: Cseg_1444: DNA repair protein RecN
 
Caulobacter sp. K31

Gene: Caul_3099: DNA repair protein RecN
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c2310: DNA repair protein RecN
DNA repair protein RecN
 
CRON 9.
lhr
*
Caulobacter crescentus CB15

Site:
position = -32
score = -0.931953
sequence = AAACAGAAAGGGAAC

Gene: CC2040: ATP-dependent RNA helicase, DEAD/DEAH family
*
Caulobacter segnis ATCC 21756

Site:
position = -32
score = -0.931953
sequence = AAACAGAAAGGGAAC

Gene: Cseg_1390: ATP-dependent RNA helicase, DEAD/DEAH family
*
Caulobacter sp. K31

Site:
position = -33
score = -0.0196649
sequence = AAACGGAACGGGAAC

Gene: Caul_1454: ATP-dependent RNA helicase, DEAD/DEAH family
*
Phenylobacterium zucineum HLK1

Site:
position = -32
score = 0.995684
sequence = AAACGAACCGCGAAC

Gene: PHZ_c2761: ATP-dependent RNA helicase, DEAD/DEAH family
ATP-dependent RNA helicase, DEAD/DEAH family
PF00149
 
Caulobacter crescentus CB15

Gene: CC2041: Conserved hypothetical protein
 
Caulobacter segnis ATCC 21756

Gene: Cseg_1389: Conserved hypothetical protein
 
Caulobacter sp. K31

Gene: Caul_1453: Conserved hypothetical protein
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c2762: Conserved hypothetical protein
Conserved hypothetical protein
 
CRON 10.
dnaE
*
Caulobacter crescentus CB15

Site:
position = -155
score = -0.214361
sequence = GAACAAAACAAGAAA

Site:
position = -173
score = 0.0689216
sequence = GAACAAAACCGGAAT

Gene: CC1926: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Caulobacter segnis ATCC 21756

Site:
position = -143
score = -0.214361
sequence = GAACAAAACAAGAAA

Site:
position = -161
score = 0.0689216
sequence = GAACAAAACCGGAAT

Gene: Cseg_2214: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Caulobacter sp. K31

Site:
position = -144
score = -0.461016
sequence = GAACAAACAGGCAAC

Site:
position = -162
score = -0.0278367
sequence = GAACAAAAGTGGAAT

Gene: Caul_2808: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Phenylobacterium zucineum HLK1

Site:
position = -205
score = 0.105097
sequence = GAACAAAAGGCGAAT

Site:
position = -188
score = 0.951787
sequence = GAACGAACAAGGAAC

Gene: PHZ_c1782: DNA polymerase III alpha subunit (EC 2.7.7.7)
DNA polymerase III alpha subunit (EC 2.7.7.7)
 
CRON 11.
imuA
*
Caulobacter crescentus CB15

Site:
position = -81
score = 0.355348
sequence = GAACAAAAGTGGAAC

Gene: CC3213: Predicted RecA/RadA recombinase
 
Caulobacter segnis ATCC 21756
*
Caulobacter sp. K31

Site:
position = -40
score = 0.355348
sequence = GAACAAAAGTGGAAC

Gene: Caul_4463: Predicted RecA/RadA recombinase
*
Phenylobacterium zucineum HLK1

Site:
position = -34
score = 0.732037
sequence = GAACGGAAGTGGAAC

Gene: PHZ_c3266: Predicted RecA/RadA recombinase
Predicted RecA/RadA recombinase
imuB
 
Caulobacter crescentus CB15

Gene: CC3212: DNA polymerase-like protein PA0670
 
Caulobacter segnis ATCC 21756

Gene: Cseg_0708: DNA polymerase-like protein PA0670
 
Caulobacter sp. K31

Gene: Caul_4462: DNA polymerase-like protein PA0670
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c3267: DNA polymerase-like protein PA0670
DNA polymerase-like protein PA0670
dnaE2
 
Caulobacter crescentus CB15

Gene: CC3211: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_0709: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Caulobacter sp. K31

Gene: Caul_4461: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c3268: DNA polymerase III alpha subunit (EC 2.7.7.7)
DNA polymerase III alpha subunit (EC 2.7.7.7)
 
CRON 12.
PF06319
*
Caulobacter crescentus CB15

Site:
position = -28
score = 0.986576
sequence = GAACAAAGCTGGAAC

Gene: CC3467: Conserved hypothetical protein
*
Caulobacter segnis ATCC 21756

Site:
position = -28
score = 0.986576
sequence = GAACAAAGCTGGAAC

Gene: Cseg_0204: Conserved hypothetical protein
*
Caulobacter sp. K31

Site:
position = -26
score = 0.986576
sequence = GAACAAAGCTGGAAC

Gene: Caul_4208: Conserved hypothetical protein
*
Phenylobacterium zucineum HLK1

Site:
position = -26
score = 0.764133
sequence = GAACGGAGGCGGAAC

Gene: PHZ_c0224: Conserved hypothetical protein
Conserved hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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