Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 61 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594 12 10
Erythrobacter sp. NAP1 12 10
Novosphingobium aromaticivorans DSM 12444 13 10
Sphingopyxis alaskensis RB2256 9 8
Sphingobium japonicum UT26S 13 10
Sphingomonas wittichii RW1 12 9
Zymomonas mobilis subsp. mobilis ZM4 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG3871
*
Erythrobacter litoralis HTCC2594

Site:
position = -118
score = 5.04148
sequence = GTTCTATTTATGTTC

Gene: ELI_05360: General stress protein
*
Erythrobacter sp. NAP1

Site:
position = -128
score = 4.70961
sequence = GTTCCTAATATGTTC

Gene: NAP1_04570: General stress protein
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -274
score = 5.06219
sequence = GTTCTTTATATGTTC

Gene: Saro_2041: General stress protein
 
Sphingopyxis alaskensis RB2256

Gene: Sala_2167: General stress protein
 2
Sphingobium japonicum UT26S

Gene: SJA_C1-20490: General stress protein

Gene: SJA_C2-00860: General stress protein
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
General stress protein
 
CRON 2.
PF04055
*
Erythrobacter litoralis HTCC2594

Site:
position = -27
score = 5.49878
sequence = GTTCCACATTTGTTC

Gene: ELI_06955: Radical SAM domain protein
*
Erythrobacter sp. NAP1

Site:
position = -20
score = 5.06219
sequence = GTTCTTTATATGTTC

Gene: NAP1_06190: Radical SAM domain protein
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1773: Radical SAM domain protein
*
Sphingopyxis alaskensis RB2256

Site:
position = -39
score = 5.15426
sequence = GTTCTTTATTTGTTC

Gene: Sala_1181: Radical SAM domain protein
*
Sphingobium japonicum UT26S

Site:
position = -25
score = 5.03359
sequence = GTTCTCTCTATGTTC

Gene: SJA_C1-17380: Radical SAM domain protein
*
Sphingomonas wittichii RW1

Site:
position = -20
score = 4.59356
sequence = GTTCATGATATGTTC

Gene: Swit_4095: Radical SAM domain protein
 
Zymomonas mobilis subsp. mobilis ZM4
Radical SAM domain protein
 
CRON 3.
recA
*
Erythrobacter litoralis HTCC2594

Site:
position = -90
score = 5.1958
sequence = GTTCCCCCCTTGTTC

Gene: ELI_07730: Recombinase A
*
Erythrobacter sp. NAP1

Site:
position = -126
score = 4.99993
sequence = GTTCTACTCTTGTTC

Gene: NAP1_06995: Recombinase A
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -88
score = 5.1958
sequence = GTTCCCCCCTTGTTC

Gene: Saro_1275: Recombinase A
*
Sphingopyxis alaskensis RB2256

Site:
position = -91
score = 5.33924
sequence = GTTCCCCTCTTGTTC

Gene: Sala_1725: Recombinase A
*
Sphingobium japonicum UT26S

Site:
position = -90
score = 5.33924
sequence = GTTCCCCTCTTGTTC

Gene: SJA_C1-32810: Recombinase A
*
Sphingomonas wittichii RW1

Site:
position = -89
score = 4.99203
sequence = GTTCTCCCCTTGTTC

Gene: Swit_0512: Recombinase A
*
Zymomonas mobilis subsp. mobilis ZM4

Site:
position = -103
score = 5.03292
sequence = GTTCACCTTATGTTC

Gene: ZMO1166: Recombinase A
Recombinase A
 
CRON 4.
lexA
*
Erythrobacter litoralis HTCC2594

Site:
position = -74
score = 5.34547
sequence = GTTCCACATTCGTTC

Gene: ELI_06530: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Erythrobacter sp. NAP1

Site:
position = -158
score = 5.34547
sequence = GTTCCACATTCGTTC

Gene: NAP1_05785: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -93
score = 5.34547
sequence = GTTCCACATTCGTTC

Gene: Saro_2029: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Sphingopyxis alaskensis RB2256

Site:
position = -61
score = 5.03269
sequence = GTTCCACTATCGTTC

Gene: Sala_0832: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Sphingobium japonicum UT26S

Site:
position = -33
score = 5.10323
sequence = GTTCTCCATCCGTTC

Gene: SJA_C1-08440: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Sphingomonas wittichii RW1

Site:
position = -44
score = 4.92149
sequence = GTTGCCTAAATGTTC

Gene: Swit_3216: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Zymomonas mobilis subsp. mobilis ZM4

Site:
position = -97
score = 5.09507
sequence = GTTCTATATCTGTTC

Gene: ZMO0199: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
 
CRON 5.
radA
*
Erythrobacter litoralis HTCC2594

Site:
position = -31
score = 4.99981
sequence = GTTCTCTTAATGTTC

Gene: ELI_06075: DNA repair protein RadA
*
Erythrobacter sp. NAP1

Site:
position = -77
score = 5.22949
sequence = GTTCCACAAATGTTC

Gene: NAP1_05385: DNA repair protein RadA
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -31
score = 5.17426
sequence = GTTCCAGATTTGTTC

Gene: Saro_1956: DNA repair protein RadA
*
Sphingopyxis alaskensis RB2256

Site:
position = -32
score = 5.33731
sequence = GTTCCATTTTTGTTC

Gene: Sala_1806: DNA repair protein RadA
*
Sphingobium japonicum UT26S

Site:
position = -30
score = 5.29187
sequence = GTTCCTCATATGTTC

Gene: SJA_C1-10500: DNA repair protein RadA
*
Sphingomonas wittichii RW1

Site:
position = -28
score = 4.21934
sequence = GTTCTTGGTTCGTTC

Gene: Swit_4092: DNA repair protein RadA
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO0589: DNA repair protein RadA
DNA repair protein RadA
cvpA
 
Erythrobacter litoralis HTCC2594

Gene: ELI_06080: Colicin V production protein
 
Erythrobacter sp. NAP1

Gene: NAP1_05390: Colicin V production protein
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1955: Colicin V production protein
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1805: Colicin V production protein
 
Sphingobium japonicum UT26S

Gene: SJA_C1-10510: Colicin V production protein
 
Sphingomonas wittichii RW1

Gene: Swit_4093: Colicin V production protein
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO0590: Colicin V production protein
Colicin V production protein
 
CRON 6.
rmuC
 
Erythrobacter litoralis HTCC2594

Gene: ELI_02090: DNA recombination protein RmuC
*
Erythrobacter sp. NAP1

Site:
position = -5
score = 4.89778
sequence = GTTCCATGTATGTTC

Gene: NAP1_01345: DNA recombination protein RmuC
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -30
score = 4.76321
sequence = GTTCCCATTTCGTTC

Gene: Saro_2898: DNA recombination protein RmuC
*
Sphingopyxis alaskensis RB2256

Site:
position = -20
score = 4.63908
sequence = GTTCGTCCTATGTTC

Gene: Sala_2055: DNA recombination protein RmuC
*
Sphingobium japonicum UT26S

Site:
position = -30
score = 4.97167
sequence = GTTCACCTTTCGTTC

Gene: SJA_C1-04020: DNA recombination protein RmuC
*
Sphingomonas wittichii RW1

Site:
position = -28
score = 4.74249
sequence = GTTCCCATTCTGTTC

Gene: Swit_0232: DNA recombination protein RmuC
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO0814: DNA recombination protein RmuC
DNA recombination protein RmuC
 
CRON 7.
uvrA
*
Erythrobacter litoralis HTCC2594

Site:
position = -24
score = 0.607669
sequence = GAACACAACGGGAAC

Gene: ELI_07900: Excinuclease ABC subunit A
*
Erythrobacter sp. NAP1

Site:
position = -64
score = 0.611846
sequence = GAACATTTGCGGAAC

Gene: NAP1_07150: Excinuclease ABC subunit A
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -25
score = 0.657311
sequence = GAACATATATGGAAC

Gene: Saro_1192: Excinuclease ABC subunit A
*
Sphingopyxis alaskensis RB2256

Site:
position = -26
score = 0.789832
sequence = GAACAAATCTGGAAC

Gene: Sala_0926: Excinuclease ABC subunit A
*
Sphingobium japonicum UT26S

Site:
position = -64
score = 0.789832
sequence = GAACAAATCTGGAAC

Gene: SJA_C1-11700: Excinuclease ABC subunit A
*
Sphingomonas wittichii RW1

Site:
position = -25
score = 0.789832
sequence = GAACAAATCTGGAAC

Gene: Swit_3107: Excinuclease ABC subunit A
*
Zymomonas mobilis subsp. mobilis ZM4

Site:
position = -94
score = -1.16307
sequence = GAACAAAGGGGGAAT

Gene: ZMO1588: Excinuclease ABC subunit A
Excinuclease ABC subunit A
 
CRON 8.
PF06319
*
Erythrobacter litoralis HTCC2594

Site:
position = -27
score = 4.80751
sequence = GTTCGCCCTCTGTTC

Gene: ELI_12605: Conserved hypothetical protein
*
Erythrobacter sp. NAP1

Site:
position = -27
score = 4.86355
sequence = GTTCGCTCTATGTTC

Gene: NAP1_13438: Conserved hypothetical protein
*2
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0621: Conserved hypothetical protein

Site:
position = -28
score = 4.16554
sequence = GTTCAGCGTTTGTTC

Gene: Saro_0242: Conserved hypothetical protein
 
Sphingopyxis alaskensis RB2256

Gene: Sala_2989: Conserved hypothetical protein
*
Sphingobium japonicum UT26S

Site:
position = -27
score = 5.22125
sequence = GTTCCCTTCATGTTC

Gene: SJA_C1-00110: Conserved hypothetical protein
*
Sphingomonas wittichii RW1

Site:
position = -9
score = 4.76152
sequence = GTTCCCGCAATGTTC

Gene: Swit_2823: Conserved hypothetical protein
 
Zymomonas mobilis subsp. mobilis ZM4
Conserved hypothetical protein
 
CRON 9.
uvrD
*
Erythrobacter litoralis HTCC2594

Site:
position = -24
score = 5.25716
sequence = GTTCCCTAACTGTTC

Site:
position = -69
score = 4.5026
sequence = GTTCCACAAACTTTC

Gene: ELI_07645: ATP-dependent DNA helicase II
*
Erythrobacter sp. NAP1

Site:
position = -39
score = 5.27484
sequence = GTTCCCTACCTGTTC

Gene: NAP1_06915: ATP-dependent DNA helicase II
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -19
score = 4.86082
sequence = GGTCCCTATCTGTTC

Gene: Saro_1293: ATP-dependent DNA helicase II
*
Sphingopyxis alaskensis RB2256

Site:
position = -19
score = 5.27788
sequence = GTTCCCTAATCGTTC

Gene: Sala_3012: ATP-dependent DNA helicase II
*
Sphingobium japonicum UT26S

Site:
position = -87
score = 4.55142
sequence = ATTCGCCTTTTGTTC

Gene: SJA_C1-21470: ATP-dependent DNA helicase II
 
Sphingomonas wittichii RW1

Gene: Swit_1212: ATP-dependent DNA helicase II
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO0574: ATP-dependent DNA helicase II
ATP-dependent DNA helicase II
 
CRON 10.
yoaA
*
Erythrobacter litoralis HTCC2594

Site:
position = -37
score = 4.56954
sequence = GTTTACTTTTCGTTC

Gene: ELI_02930: DinG family ATP-dependent helicase YoaA
 
Erythrobacter sp. NAP1

Gene: NAP1_02265: DinG family ATP-dependent helicase YoaA
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -27
score = 5.00373
sequence = GTTCCATTCCTGTTC

Gene: Saro_2362: DinG family ATP-dependent helicase YoaA
*
Sphingopyxis alaskensis RB2256

Site:
position = -28
score = 4.63102
sequence = GTTCGCCTTTTGTCC

Gene: Sala_1414: DinG family ATP-dependent helicase YoaA
*
Sphingobium japonicum UT26S

Site:
position = -36
score = 5.12257
sequence = GTTTCCCTTTTGTTC

Gene: SJA_C1-32440: DinG family ATP-dependent helicase YoaA
*
Sphingomonas wittichii RW1

Site:
position = -39
score = 5.3038
sequence = GTTCCCCAATCGTTC

Gene: Swit_3565: DinG family ATP-dependent helicase YoaA
 
Zymomonas mobilis subsp. mobilis ZM4

Gene: ZMO0892: DinG family ATP-dependent helicase YoaA
DinG family ATP-dependent helicase YoaA
 
CRON 11.
imuA
*
Erythrobacter litoralis HTCC2594

Site:
position = -32
score = 0.792866
sequence = GAACATAAATAGAAC

Gene: ELI_05365: Predicted RecA/RadA recombinase
*
Erythrobacter sp. NAP1

Site:
position = -148
score = 0.742462
sequence = GAACATATTAGGAAC

Gene: NAP1_04575: Predicted RecA/RadA recombinase
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -17
score = 0.878017
sequence = GAACATAATAGGAAC

Gene: Saro_1536: Predicted RecA/RadA recombinase
 
Sphingopyxis alaskensis RB2256
*
Sphingobium japonicum UT26S

Site:
position = -19
score = 0.318879
sequence = GAACAAATAGGGAAC

Gene: SJA_C1-11420: Predicted RecA/RadA recombinase
*
Sphingomonas wittichii RW1

Site:
position = -15
score = 0.907707
sequence = GAACAAAAATAGAAC

Gene: Swit_1121: Predicted RecA/RadA recombinase
 
Zymomonas mobilis subsp. mobilis ZM4
Predicted RecA/RadA recombinase
imuB
 
Erythrobacter litoralis HTCC2594

Gene: ELI_05370: DNA polymerase-like protein PA0670
 
Erythrobacter sp. NAP1

Gene: NAP1_04580: hypothetical protein
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1537: DNA polymerase-like protein PA0670
 
Sphingopyxis alaskensis RB2256

Gene: Sala_2779: DNA polymerase-like protein PA0670
 
Sphingobium japonicum UT26S

Gene: SJA_C1-11430: DNA polymerase-like protein PA0670
 
Sphingomonas wittichii RW1

Gene: Swit_1120: DNA polymerase-like protein PA0670
 
Zymomonas mobilis subsp. mobilis ZM4
DNA polymerase-like protein PA0670
dnaE2
 
Erythrobacter litoralis HTCC2594

Gene: ELI_05390: DNA polymerase III alpha chain
 
Erythrobacter sp. NAP1

Gene: NAP1_04600: DNA polymerase III alpha chain
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1538: DNA polymerase III alpha chain
 
Sphingopyxis alaskensis RB2256

Gene: Sala_2780: DNA polymerase III alpha chain
 
Sphingobium japonicum UT26S

Gene: SJA_C1-11440: DNA polymerase III alpha chain
 
Sphingomonas wittichii RW1

Gene: Swit_1119: DNA polymerase III alpha chain
 
Zymomonas mobilis subsp. mobilis ZM4
DNA polymerase III alpha chain
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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