Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodospirillum rubrum ATCC 11170 3 3
Magnetospirillum magnetotacticum MS-1 6 6
Magnetospirillum magneticum AMB-1 5 5
Azospirillum sp. B510 6 6
Rhodospirillum centenum SW 5 5
Gluconacetobacter diazotrophicus PAl 5 6 6
Acetobacter pasteurianus IFO 3283-01 6 6
Gluconobacter oxydans 621H 5 5
Granulibacter bethesdensis CGDNIH1 5 5
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lexA
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -114
score = 0.87413
sequence = GAACCAAAGTAGAAC

Gene: Rru_A1898: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Magnetospirillum magnetotacticum MS-1

Site:
position = -120
score = -0.582136
sequence = AAACAAAACGGAATC

Site:
position = -48
score = 4.55665
sequence = GTTTGTTCTTTGTTC

Gene: Magn03009696: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Magnetospirillum magneticum AMB-1

Site:
position = -118
score = -0.582136
sequence = AAACAAAACGGAATC

Site:
position = -46
score = 4.55665
sequence = GTTTGTTCTTTGTTC

Gene: amb2866: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Azospirillum sp. B510

Site:
position = -74
score = 0.754072
sequence = GAACCAAACTAGAAC

Gene: AZL_016060: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Rhodospirillum centenum SW

Site:
position = -50
score = 4.38095
sequence = GTTCCGGTAATGTTC

Site:
position = -76
score = 0.754072
sequence = GAACCAAACTAGAAC

Gene: RC1_1189: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -71
score = 4.48197
sequence = GTTTCCTGTTTGTTC

Gene: Gdia_0145: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -64
score = 1.85836
sequence = GAACTTATATAGAAC

Gene: APA01_10940: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Gluconobacter oxydans 621H

Site:
position = -24
score = 1.62017
sequence = GAACCTATAAGGAAC

Gene: GOX2276: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Granulibacter bethesdensis CGDNIH1

Site:
position = -62
score = 4.34278
sequence = GTTGCCCGTTTGTTC

Gene: GbCGDNIH1_0816: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
 
CRON 2.
dinB
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -54
score = 1.62792
sequence = GAACATTTAGGGTAC

Gene: Rru_A3530: DNA polymerase IV (EC 2.7.7.7)
*
Magnetospirillum magnetotacticum MS-1

Site:
position = -95
score = 2.31712
sequence = GAACATATGGTGATC

Gene: Magn03009220: DNA polymerase IV (EC 2.7.7.7)
*
Magnetospirillum magneticum AMB-1

Site:
position = 4
score = 2.31712
sequence = GAACATATGGTGATC

Gene: amb0623: DNA polymerase IV (EC 2.7.7.7)
 
Azospirillum sp. B510

Gene: AZL_d01040: DNA polymerase IV (EC 2.7.7.7)
 
Rhodospirillum centenum SW

Gene: RC1_1534: DNA polymerase IV (EC 2.7.7.7)
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_1185: DNA polymerase IV (EC 2.7.7.7)
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -50
score = 4.57432
sequence = GTTTTCTGTTTGTTC

Gene: APA01_02490: DNA polymerase IV (EC 2.7.7.7)
*
Gluconobacter oxydans 621H

Site:
position = -39
score = 4.59466
sequence = GATCTTGTTTCGTTC

Gene: GOX0844: DNA polymerase IV (EC 2.7.7.7)
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_0216: DNA polymerase IV (EC 2.7.7.7)
DNA polymerase IV (EC 2.7.7.7)
 
CRON 3.
yoaA
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A3036: DinG family ATP-dependent helicase
*
Magnetospirillum magnetotacticum MS-1

Site:
position = -54
score = 3.8834
sequence = GTGCACCAATCGTTC

Gene: Magn03008981: DinG family ATP-dependent helicase
*
Magnetospirillum magneticum AMB-1

Site:
position = -33
score = 3.8834
sequence = GTGCACCAATCGTTC

Gene: amb3608: DinG family ATP-dependent helicase
 
Azospirillum sp. B510

Gene: AZL_024120: DinG family ATP-dependent helicase
*
Rhodospirillum centenum SW

Site:
position = -86
score = 4.60714
sequence = GTTCACCTTTTGTTG

Gene: RC1_3311: DinG family ATP-dependent helicase
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -20
score = 4.30517
sequence = GTGCCCTATATGTTC

Gene: Gdia_0269: DinG family ATP-dependent helicase
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -50
score = 4.33008
sequence = GTTCTTCATATGTTG

Gene: APA01_17830: DinG family ATP-dependent helicase
*
Gluconobacter oxydans 621H

Site:
position = -71
score = 4.09341
sequence = TTTCACGTTCCGTTC

Gene: GOX1904: DinG family ATP-dependent helicase
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_2175: DinG family ATP-dependent helicase
DinG family ATP-dependent helicase
 
CRON 4.
dnaB
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A0410: Replicative DNA helicase (EC 3.6.1.-)
*2
Magnetospirillum magnetotacticum MS-1

Site:
position = -254
score = 4.68263
sequence = GTTCTCAATCCGTTC

Gene: Magn03007150: Replicative DNA helicase (EC 3.6.1.-)

Gene: Magn03008613: Replicative DNA helicase (EC 3.6.1.-)
 
Magnetospirillum magneticum AMB-1

Gene: amb2097: Replicative DNA helicase (EC 3.6.1.-)
*
Azospirillum sp. B510

Site:
position = -33
score = 4.34511
sequence = GTTCCCGTTCCGTTT

Gene: AZL_e01730: Replicative DNA helicase (EC 3.6.1.-)
 
Rhodospirillum centenum SW

Gene: RC1_1577: Replicative DNA helicase (EC 3.6.1.-)
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_1848: Replicative DNA helicase (EC 3.6.1.-)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_06910: Replicative DNA helicase (EC 3.6.1.-)
 
Gluconobacter oxydans 621H

Gene: GOX1206: Replicative DNA helicase (EC 3.6.1.-)
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_2217: Replicative DNA helicase (EC 3.6.1.-)
Replicative DNA helicase (EC 3.6.1.-)
 
CRON 5.
PF04055
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
*
Azospirillum sp. B510

Site:
position = -41
score = 4.97906
sequence = GTTCACTTTACGTTC

Gene: AZL_026530: Radical SAM domain protein
*
Rhodospirillum centenum SW

Site:
position = -9
score = 5.11134
sequence = GTTCTTGATATGTTC

Gene: RC1_3178: Radical SAM domain protein
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -47
score = 5.51668
sequence = GTTCCCGTTTTGTTC

Gene: Gdia_3517: Radical SAM domain protein
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
*
Granulibacter bethesdensis CGDNIH1

Site:
position = -71
score = 4.6169
sequence = GTTCATTCATTGTTC

Gene: GbCGDNIH1_1856: Radical SAM domain protein
Radical SAM domain protein
 
CRON 6.
rmuC
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A3348: DNA recombination protein RmuC
*
Magnetospirillum magnetotacticum MS-1

Site:
position = -26
score = 5.03758
sequence = GTTCCCGTAATGTTC

Gene: Magn03010153: DNA recombination protein RmuC
*
Magnetospirillum magneticum AMB-1

Site:
position = 16
score = 5.03758
sequence = GTTCCCGTAATGTTC

Gene: amb4124: DNA recombination protein RmuC
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_2949: DNA recombination protein RmuC
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = 4
score = 4.31519
sequence = GTTCCATAATTGTTC

Gene: APA01_09170: DNA recombination protein RmuC
 
Gluconobacter oxydans 621H

Gene: GOX0396: DNA recombination protein RmuC
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_2169: DNA recombination protein RmuC
DNA recombination protein RmuC
 
CRON 7.
recG
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1728: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 2
Magnetospirillum magnetotacticum MS-1

Gene: Magn03008240: ATP-dependent DNA helicase RecG (EC 3.6.1.-)

Gene: Magn03003751: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Magnetospirillum magneticum AMB-1

Gene: amb2467: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Azospirillum sp. B510

Gene: AZL_016620: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Rhodospirillum centenum SW

Gene: RC1_1265: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -111
score = 4.46382
sequence = GGTTTCGTTTTGTTC

Gene: Gdia_0107: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_11040: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
*
Gluconobacter oxydans 621H

Site:
position = -90
score = 4.46382
sequence = GGTTTCGTTTTGTTC

Gene: GOX0056: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_0834: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
CRON 8.
uvrA
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1752: Excinuclease ABC subunit A
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03007611: Excinuclease ABC subunit A
 
Magnetospirillum magneticum AMB-1

Gene: amb2469: Excinuclease ABC subunit A
*
Azospirillum sp. B510

Site:
position = -9
score = 1.70537
sequence = GAACACACCATGAAC

Gene: AZL_014850: Excinuclease ABC subunit A
*
Rhodospirillum centenum SW

Site:
position = -9
score = 1.51927
sequence = GAACACAGCATGAAC

Site:
position = -236
score = 1.15371
sequence = GAACATTTCAGGAAC

Gene: RC1_1053: Excinuclease ABC subunit A
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -65
score = 1.56787
sequence = GAACAGAGTATGAAC

Gene: Gdia_0538: Excinuclease ABC subunit A
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -32
score = 0.600018
sequence = GGACAAAACAGGAAC

Gene: APA01_00110: Excinuclease ABC subunit A
 
Gluconobacter oxydans 621H

Gene: GOX0892: Excinuclease ABC subunit A
*
Granulibacter bethesdensis CGDNIH1

Site:
position = 25
score = 1.11869
sequence = GAACTTTTCCAGAAC

Gene: GbCGDNIH1_1221: Excinuclease ABC subunit A
Excinuclease ABC subunit A
 
CRON 9.
parC
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1848: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03006127: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Magnetospirillum magneticum AMB-1

Gene: amb2585: Topoisomerase IV subunit A (EC 5.99.1.-)
*
Azospirillum sp. B510

Site:
position = -56
score = 1.32323
sequence = GAACGTTACGCGAAC

Gene: AZL_018280: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Rhodospirillum centenum SW

Gene: RC1_1481: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_3350: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_19400: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Gluconobacter oxydans 621H

Gene: GOX0073: Topoisomerase IV subunit A (EC 5.99.1.-)
*
Granulibacter bethesdensis CGDNIH1

Site:
position = -9
score = 0.182504
sequence = AAACGGAACGTGAAC

Gene: GbCGDNIH1_0995: Topoisomerase IV subunit A (EC 5.99.1.-)
Topoisomerase IV subunit A (EC 5.99.1.-)
 
CRON 10.
recA
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -68
score = 0.954164
sequence = GAACAAAAAGAGTAC

Site:
position = -104
score = 4.35265
sequence = GATCTTGTTCTGTTC

Gene: Rru_A2819: Recombinase A
*
Magnetospirillum magnetotacticum MS-1

Site:
position = -98
score = 4.69373
sequence = GTTCTCCTCTCGTTC

Gene: Magn03011075: Recombinase A
*
Magnetospirillum magneticum AMB-1

Site:
position = -110
score = 1.09833
sequence = GAACTGAAATGGAAC

Gene: amb0622: Recombinase A
*
Azospirillum sp. B510

Site:
position = -103
score = 0.185605
sequence = GAACGCACCGGAAAC

Gene: AZL_012130: Recombinase A
*
Rhodospirillum centenum SW

Site:
position = -104
score = 0.840161
sequence = GAACATAGAGAGAAC

Gene: RC1_0899: Recombinase A
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -135
score = 4.5335
sequence = GATCATGTTTTGTTC

Gene: Gdia_0513: Recombinase A
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -33
score = 4.42401
sequence = GTTGCCAATTTGTTC

Gene: APA01_00440: Recombinase A
*
Gluconobacter oxydans 621H

Site:
position = -116
score = 2.11499
sequence = GAACATTTTGCGAAC

Gene: GOX1522: Recombinase A
*
Granulibacter bethesdensis CGDNIH1

Site:
position = -108
score = 2.49634
sequence = GAACATATTATGAAC

Gene: GbCGDNIH1_1384: Recombinase A
Recombinase A
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD