Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 128 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 10 7
Paracoccus denitrificans PD1222 12 7
Jannaschia sp. CCS1 12 8
Rhodobacterales bacterium HTCC2654 11 9
Oceanicola granulosus HTCC2516 10 8
Loktanella vestfoldensis SKA53 11 7
Oceanicola batsensis HTCC2597 10 8
Roseovarius nubinhibens ISM 9 7
Roseovarius sp. 217 11 9
Sulfitobacter sp. EE-36 12 9
Silicibacter TM1040 9 7
Silicibacter pomeroyi DSS-3 8 6
Roseobacter sp. MED193 14 9
Hyphomonas neptunium ATCC 15444 9 7
Oceanicaulis alexandrii HTCC2633 8 6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
imuA
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -56
score = 0.707591
sequence = GAACAAATCAGGAAC

Gene: Pden_4289: Predicted RecA/RadA recombinase
*
Jannaschia sp. CCS1

Site:
position = 10
score = 0.823901
sequence = GAACAAATAGGGAAC

Gene: Jann_1560: Predicted RecA/RadA recombinase
 
Rhodobacterales bacterium HTCC2654
*
Oceanicola granulosus HTCC2516

Site:
position = -40
score = 0.827649
sequence = GAACAAATGAAGAAC

Gene: OG2516_00284: Predicted RecA/RadA recombinase
*
Loktanella vestfoldensis SKA53

Site:
position = -59
score = 0.982698
sequence = GAACAAAGCATGAAC

Gene: SKA53_09714: Predicted RecA/RadA recombinase
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM

Gene: ISM_11265: Predicted RecA/RadA recombinase
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_00375: Predicted RecA/RadA recombinase
 
Silicibacter TM1040

Gene: TM1040_0177: Predicted RecA/RadA recombinase
 
Silicibacter pomeroyi DSS-3

Gene: SPO0672: Predicted RecA/RadA recombinase
 
Roseobacter sp. MED193

Gene: MED193_05974: Predicted RecA/RadA recombinase
*
Hyphomonas neptunium ATCC 15444

Site:
position = -17
score = 1.18519
sequence = GAACAAAATAAGAAC

Gene: HNE_2464: Predicted RecA/RadA recombinase
 
Oceanicaulis alexandrii HTCC2633
Predicted RecA/RadA recombinase
imuB
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -20
score = 0.621057
sequence = GAACGAAACAGGAAC

Gene: RSP_1458: DNA polymerase-like protein PA0670
 
Paracoccus denitrificans PD1222

Gene: Pden_4290: DNA polymerase-like protein PA0670
 
Jannaschia sp. CCS1

Gene: Jann_1559: DNA polymerase-like protein PA0670
*
Rhodobacterales bacterium HTCC2654

Site:
position = -37
score = 1.71358
sequence = GAACATTAAGTGAAC

Gene: RB2654_16956: DNA polymerase-like protein PA0670
 
Oceanicola granulosus HTCC2516

Gene: OG2516_00265: DNA polymerase-like protein PA0670
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09709: DNA polymerase-like protein PA0670
*
Oceanicola batsensis HTCC2597

Site:
position = -27
score = 1.40536
sequence = GAACGTAAAAGGAAC

Gene: OB2597_10771: DNA polymerase-like protein PA0670
 
Roseovarius nubinhibens ISM

Gene: ISM_11260: DNA polymerase-like protein PA0670
*
Roseovarius sp. 217

Site:
position = -24
score = 0.823901
sequence = GAACAAATAGAGAAC

Gene: ROS217_11166: DNA polymerase-like protein PA0670
 
Sulfitobacter sp. EE-36

Gene: EE36_00380: DNA polymerase-like protein PA0670
 
Silicibacter TM1040

Gene: TM1040_0176: DNA polymerase-like protein PA0670
 
Silicibacter pomeroyi DSS-3

Gene: SPO0671: DNA polymerase-like protein PA0670
 
Roseobacter sp. MED193

Gene: MED193_05979: DNA polymerase-like protein PA0670
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2465: DNA polymerase-like protein PA0670
 
Oceanicaulis alexandrii HTCC2633
DNA polymerase-like protein PA0670
dnaE2
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_1123: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Paracoccus denitrificans PD1222

Gene: Pden_4291: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Jannaschia sp. CCS1

Gene: Jann_1558: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Rhodobacterales bacterium HTCC2654

Site:
position = -28
score = 0.284889
sequence = GAACAAAACGTGAAT

Gene: RB2654_12554: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_00260: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_09704: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Oceanicola batsensis HTCC2597

Site:
position = -48
score = 0.284889
sequence = GAACAAAACGTGAAT

Gene: OB2597_14496: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Roseovarius nubinhibens ISM

Gene: ISM_11255: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Roseovarius sp. 217

Site:
position = -46
score = 0.625792
sequence = GAACAAAACTGGAAC

Gene: ROS217_05784: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Sulfitobacter sp. EE-36

Gene: EE36_00385: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Silicibacter TM1040

Gene: TM1040_0175: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Silicibacter pomeroyi DSS-3

Gene: SPO0670: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Roseobacter sp. MED193

Gene: MED193_05984: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2466: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Oceanicaulis alexandrii HTCC2633
DNA polymerase III alpha subunit (EC 2.7.7.7)
 
CRON 2.
ruvC
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -48
score = 4.97404
sequence = GTTCCCGCTTCGTGC

Gene: RSP_0556: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Paracoccus denitrificans PD1222

Site:
position = -44
score = 5.14624
sequence = GTTCGCCTTTCGTGC

Gene: Pden_0696: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Jannaschia sp. CCS1

Site:
position = 2
score = 5.19684
sequence = GTTCGCGTTTCGTGC

Gene: Jann_0964: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Rhodobacterales bacterium HTCC2654

Site:
position = -62
score = 5.19684
sequence = GTTCGCGTTTCGTGC

Gene: RB2654_05712: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Oceanicola granulosus HTCC2516

Site:
position = -50
score = 4.85623
sequence = GTTCGCTGTTTGTGC

Gene: OG2516_07702: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Loktanella vestfoldensis SKA53

Site:
position = -49
score = 5.30572
sequence = GTTCGCCTTTTGTGC

Gene: SKA53_08611: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Oceanicola batsensis HTCC2597

Site:
position = -61
score = 4.72409
sequence = GTTCACTATTCGTGC

Gene: OB2597_15620: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Roseovarius nubinhibens ISM

Site:
position = -60
score = 5.15214
sequence = GTTCTTGTTTCGTGC

Gene: ISM_03450: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Roseovarius sp. 217

Site:
position = -51
score = 5.18402
sequence = GTTCCCGTTTCGTGC

Gene: ROS217_22507: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Sulfitobacter sp. EE-36

Site:
position = -56
score = 5.19684
sequence = GTTCGCGTTTCGTGC

Gene: EE36_09705: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Silicibacter TM1040

Site:
position = 4
score = 5.35632
sequence = GTTCGCGTTTTGTGC

Gene: TM1040_2373: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Silicibacter pomeroyi DSS-3

Site:
position = -60
score = 5.13342
sequence = GTTCCCCTTTCGTGC

Gene: SPO3117: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Roseobacter sp. MED193

Site:
position = -64
score = 5.30572
sequence = GTTCGCCTTTTGTGC

Gene: MED193_09210: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0145: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -38
score = 4.9189
sequence = GGTCGCGTTTTGTTC

Gene: OA2633_07399: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0555: Holliday junction DNA helicase RuvA
 
Paracoccus denitrificans PD1222

Gene: Pden_0695: Holliday junction DNA helicase RuvA
 
Jannaschia sp. CCS1

Gene: Jann_0965: Holliday junction DNA helicase RuvA
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_05707: Holliday junction DNA helicase RuvA
 
Oceanicola granulosus HTCC2516

Gene: OG2516_07697: Holliday junction DNA helicase RuvA
 
Loktanella vestfoldensis SKA53

Gene: SKA53_08606: Holliday junction DNA helicase RuvA
 
Oceanicola batsensis HTCC2597

Gene: OB2597_15625: Holliday junction DNA helicase RuvA
 
Roseovarius nubinhibens ISM

Gene: ISM_03445: Holliday junction DNA helicase RuvA
 
Roseovarius sp. 217

Gene: ROS217_22502: Holliday junction DNA helicase RuvA
 
Sulfitobacter sp. EE-36

Gene: EE36_09710: Holliday junction DNA helicase RuvA
 
Silicibacter TM1040

Gene: TM1040_2372: Holliday junction DNA helicase RuvA
 
Silicibacter pomeroyi DSS-3

Gene: SPO3116: Holliday junction DNA helicase RuvA
 2
Roseobacter sp. MED193

Gene: MED193_09205: Holliday junction DNA helicase RuvA

Gene: MED193_09200: Holliday junction DNA helicase RuvA
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0146: Holliday junction DNA helicase RuvA
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_07394: Holliday junction DNA helicase RuvA
Holliday junction DNA helicase RuvA
htpx
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0554: Zn-dependent protease with chaperone function
 
Paracoccus denitrificans PD1222

Gene: Pden_0694: Zn-dependent protease with chaperone function
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53

Gene: SKA53_08161: Zn-dependent protease with chaperone function
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_16735: Zn-dependent protease with chaperone function
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3367: Zn-dependent protease with chaperone function
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_10834: Zn-dependent protease with chaperone function
Zn-dependent protease with chaperone function
ruvB
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0553: Holliday junction DNA helicase RuvB
 
Paracoccus denitrificans PD1222

Gene: Pden_0693: Holliday junction DNA helicase RuvB
 
Jannaschia sp. CCS1

Gene: Jann_0966: Holliday junction DNA helicase RuvB
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_05702: Holliday junction DNA helicase RuvB
 
Oceanicola granulosus HTCC2516

Gene: OG2516_07692: Holliday junction DNA helicase RuvB
 
Loktanella vestfoldensis SKA53

Gene: SKA53_08601: Holliday junction DNA helicase RuvB
 
Oceanicola batsensis HTCC2597

Gene: OB2597_15630: Holliday junction DNA helicase RuvB
 
Roseovarius nubinhibens ISM

Gene: ISM_03440: Holliday junction DNA helicase RuvB
 
Roseovarius sp. 217

Gene: ROS217_22497: Holliday junction DNA helicase RuvB
 
Sulfitobacter sp. EE-36

Gene: EE36_09715: Holliday junction DNA helicase RuvB
 
Silicibacter TM1040

Gene: TM1040_2371: Holliday junction DNA helicase RuvB
 
Silicibacter pomeroyi DSS-3

Gene: SPO3115: Holliday junction DNA helicase RuvB
 
Roseobacter sp. MED193

Gene: MED193_09195: Holliday junction DNA helicase RuvB
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0147: Holliday junction DNA helicase RuvB
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_07389: Holliday junction DNA helicase RuvB
Holliday junction DNA helicase RuvB
 
CRON 3.
uvrA
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -92
score = 4.77055
sequence = GTTCATACTATGTTC

Gene: RSP_2966: Excinuclease ABC subunit A
*
Paracoccus denitrificans PD1222

Site:
position = -81
score = 4.66144
sequence = GTTCCTGTGATGTTC

Gene: Pden_2252: Excinuclease ABC subunit A
*
Jannaschia sp. CCS1

Site:
position = -82
score = 4.52623
sequence = GTTCCTGAAACGTTC

Gene: Jann_1723: Excinuclease ABC subunit A
*
Rhodobacterales bacterium HTCC2654

Site:
position = -81
score = 4.88113
sequence = GTTCACACTTCGTTC

Gene: RB2654_04776: Excinuclease ABC subunit A
*
Oceanicola granulosus HTCC2516

Site:
position = -80
score = 5.17369
sequence = GTTCGCGCTATGTTC

Gene: OG2516_01124: Excinuclease ABC subunit A
*
Loktanella vestfoldensis SKA53

Site:
position = -78
score = 4.09327
sequence = GTTCTATGAATGTTC

Gene: SKA53_02831: Excinuclease ABC subunit A
*
Oceanicola batsensis HTCC2597

Site:
position = -80
score = 4.84042
sequence = GTTCGCGCAATGTTC

Gene: OB2597_01212: Excinuclease ABC subunit A
*
Roseovarius nubinhibens ISM

Site:
position = -77
score = 4.85452
sequence = GTTCACAGTTTGTTC

Gene: ISM_10865: Excinuclease ABC subunit A
*
Roseovarius sp. 217

Site:
position = -82
score = 4.91804
sequence = GTTCGCGCTCTGTTC

Gene: ROS217_19127: Excinuclease ABC subunit A
*
Sulfitobacter sp. EE-36

Site:
position = -78
score = 5.0646
sequence = GTTCCCCTTGTGTTC

Gene: EE36_13533: Excinuclease ABC subunit A
*
Silicibacter TM1040

Site:
position = -77
score = 4.85462
sequence = GTTCCCCCTCTGTTC

Gene: TM1040_1098: Excinuclease ABC subunit A
*
Silicibacter pomeroyi DSS-3

Site:
position = -81
score = 5.1997
sequence = GTTCTCTTTACGTTC

Gene: SPO2218: Excinuclease ABC subunit A
*
Roseobacter sp. MED193

Site:
position = -117
score = 4.79562
sequence = GTTCTTCTAACGTTC

Gene: MED193_03447: Excinuclease ABC subunit A
*
Hyphomonas neptunium ATCC 15444

Site:
position = -95
score = 5.25059
sequence = GTTCACATTTTGTTC

Gene: HNE_2765: Excinuclease ABC subunit A
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -187
score = 4.68963
sequence = GTTCACATTCCGTTC

Gene: OA2633_04146: Excinuclease ABC subunit A
Excinuclease ABC subunit A
 
CRON 4.
PF04055
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -27
score = 4.85169
sequence = GTTCCCTTTGCGTTC

Gene: RSP_2123: Radical SAM domain protein
*
Paracoccus denitrificans PD1222

Site:
position = -27
score = 4.79829
sequence = GTTCTCTAAATGTTC

Gene: Pden_3951: Radical SAM domain protein
*
Jannaschia sp. CCS1

Site:
position = -9
score = 4.72747
sequence = GTTCTTCAAATGTTC

Gene: Jann_2549: Radical SAM domain protein
*
Rhodobacterales bacterium HTCC2654

Site:
position = -20
score = 4.54277
sequence = GTTCTACTAATGTTC

Gene: RB2654_02045: Radical SAM domain protein
*
Oceanicola granulosus HTCC2516

Site:
position = -30
score = 5.4342
sequence = GTTCTTCTTTTGTTC

Gene: OG2516_06172: Radical SAM domain protein
 
Loktanella vestfoldensis SKA53
*
Oceanicola batsensis HTCC2597

Site:
position = -27
score = 5.02592
sequence = GTTCTCTTAATGTTC

Gene: OB2597_03227: Radical SAM domain protein
*
Roseovarius nubinhibens ISM

Site:
position = -27
score = 5.13342
sequence = GTTCGCGGTTTGTTC

Gene: ISM_13455: Radical SAM domain protein
*
Roseovarius sp. 217

Site:
position = 6
score = 5.13155
sequence = GTTCTCTATATGTTC

Gene: ROS217_19572: Radical SAM domain protein
*
Sulfitobacter sp. EE-36

Site:
position = -27
score = 5.02701
sequence = GTTCCTAATTTGTTC

Gene: EE36_15677: Radical SAM domain protein
*
Silicibacter TM1040

Site:
position = -39
score = 5.15315
sequence = GTTCTTTATTTGTTC

Gene: TM1040_1469: Radical SAM domain protein
 
Silicibacter pomeroyi DSS-3

Gene: SPO2159: Radical SAM domain protein
*
Roseobacter sp. MED193

Site:
position = -39
score = 5.20657
sequence = GTTCTTCATTTGTTC

Gene: MED193_22781: Radical SAM domain protein
*
Hyphomonas neptunium ATCC 15444

Site:
position = -100
score = 5.27482
sequence = GTTCTTGCTTTGTTC

Gene: HNE_1903: Radical SAM domain protein
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -9
score = 5.11134
sequence = GTTCTTGATATGTTC

Gene: OA2633_14191: Radical SAM domain protein
Radical SAM domain protein
 
CRON 5.
lexA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_1997: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Paracoccus denitrificans PD1222

Site:
position = -47
score = 1.41506
sequence = GAACAATCAACGAAC

Gene: Pden_2142: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Jannaschia sp. CCS1

Site:
position = -77
score = 1.32548
sequence = GAACATACCCTGAAC

Gene: Jann_1874: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Rhodobacterales bacterium HTCC2654

Site:
position = -83
score = -0.368622
sequence = ACACGAAACGAGAAC

Gene: RB2654_04726: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Oceanicola granulosus HTCC2516

Site:
position = -70
score = -0.509719
sequence = ACACAAAACGGGAAC

Gene: OG2516_03218: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Loktanella vestfoldensis SKA53

Site:
position = -32
score = 0.022675
sequence = GAACATAAGCAAAAC

Site:
position = -54
score = -0.389661
sequence = ACACAAAAGGGGAAC

Gene: SKA53_02996: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Oceanicola batsensis HTCC2597

Site:
position = -63
score = 0.417118
sequence = ACACAAAACATGAAC

Gene: OB2597_01402: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Roseovarius nubinhibens ISM

Site:
position = -58
score = -0.509719
sequence = ACACAAAACGAGAAC

Gene: ISM_14765: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Roseovarius sp. 217

Site:
position = -58
score = -0.509719
sequence = ACACAAAACGGGAAC

Gene: ROS217_21392: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Sulfitobacter sp. EE-36

Site:
position = -56
score = -0.254066
sequence = ACACAAAACAGGAAC

Gene: EE36_16202: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Silicibacter TM1040

Site:
position = -58
score = -0.509719
sequence = ACACAAAACGGGAAC

Site:
position = -83
score = 4.58627
sequence = GTTCCCCTTATGACC

Gene: TM1040_1135: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Silicibacter pomeroyi DSS-3

Site:
position = -59
score = -0.254066
sequence = ACACAAAACAAGAAC

Gene: SPO2154: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Roseobacter sp. MED193

Site:
position = -47
score = 1.5479
sequence = GAACATGAATAGAAC

Site:
position = -58
score = -0.509719
sequence = ACACAAAACGGGAAC

Gene: MED193_03687: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_1786: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -27
score = 4.72002
sequence = GTTTCTATTTTGTTC

Gene: OA2633_02671: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
 
CRON 6.
PF06319
*
Rhodobacter sphaeroides 2.4.1

Site:
position = 10
score = 4.45562
sequence = GTTCCCTGTCCGTTC

Gene: RSP_0751: Transcription elongation factor
*
Paracoccus denitrificans PD1222

Site:
position = -26
score = 4.82258
sequence = GTTTCCGTTTCGTTC

Gene: Pden_1550: Transcription elongation factor
*
Jannaschia sp. CCS1

Site:
position = -26
score = 5.00454
sequence = GTTCACCTATTGTTC

Gene: Jann_3406: Transcription elongation factor
*
Rhodobacterales bacterium HTCC2654

Site:
position = -26
score = 4.8275
sequence = GTTCACGAATTGTTC

Gene: RB2654_05485: Transcription elongation factor
*
Oceanicola granulosus HTCC2516

Site:
position = -27
score = 4.93147
sequence = GTTTCCCTTTTGTTC

Gene: OG2516_05778: Transcription elongation factor
*
Loktanella vestfoldensis SKA53

Site:
position = -26
score = 5.00454
sequence = GTTCACCTATTGTTC

Gene: SKA53_02001: Transcription elongation factor
*
Oceanicola batsensis HTCC2597

Site:
position = -26
score = 4.57765
sequence = GTTCACTAAATGTTC

Gene: OB2597_02052: Transcription elongation factor
*
Roseovarius nubinhibens ISM

Site:
position = -26
score = 5.14722
sequence = GTTCCCGCTTCGTTC

Gene: ISM_00090: Transcription elongation factor
*
Roseovarius sp. 217

Site:
position = -26
score = 5.00919
sequence = GTTCGTGGTTTGTTC

Gene: ROS217_03665: Transcription elongation factor
*
Sulfitobacter sp. EE-36

Site:
position = -26
score = 4.70327
sequence = GTTCATGAATTGTTC

Gene: EE36_02883: Transcription elongation factor
*
Silicibacter TM1040

Site:
position = -170
score = 4.72348
sequence = GTTCACTAATTGTTC

Gene: TM1040_2122: Transcription elongation factor
*
Silicibacter pomeroyi DSS-3

Site:
position = -20
score = 5.00454
sequence = GTTCACCTATTGTTC

Gene: SPO1766: Transcription elongation factor
*
Roseobacter sp. MED193

Site:
position = -26
score = 5.17175
sequence = GTTCTCTTATTGTTC

Gene: MED193_08438: Transcription elongation factor
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3451: Transcription elongation factor
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_09489: Transcription elongation factor
Transcription elongation factor
 
CRON 7.
rmuC
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
*
Hyphomonas neptunium ATCC 15444

Site:
position = -41
score = 4.57641
sequence = GTTCCGATTATGTTC

Gene: HNE_0511: DNA recombination protein RmuC
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -37
score = 4.7466
sequence = GGTCCCGTTTCGTTC

Gene: OA2633_12765: DNA recombination protein RmuC
DNA recombination protein RmuC
 
CRON 8.
radA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2456: DNA repair protein RadA
 
Paracoccus denitrificans PD1222

Gene: Pden_3941: DNA repair protein RadA
 
Jannaschia sp. CCS1

Gene: Jann_1712: DNA repair protein RadA
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_02269: DNA repair protein RadA
 
Oceanicola granulosus HTCC2516

Gene: OG2516_15619: DNA repair protein RadA
 
Loktanella vestfoldensis SKA53

Gene: SKA53_02581: DNA repair protein RadA
 
Oceanicola batsensis HTCC2597

Gene: OB2597_00495: DNA repair protein RadA
 
Roseovarius nubinhibens ISM

Gene: ISM_15830: DNA repair protein RadA
 
Roseovarius sp. 217

Gene: ROS217_20382: DNA repair protein RadA
*
Sulfitobacter sp. EE-36

Site:
position = -29
score = 4.72149
sequence = GTTTCCCCTTTGTTC

Gene: EE36_16347: DNA repair protein RadA
 
Silicibacter TM1040

Gene: TM1040_1784: DNA repair protein RadA
 
Silicibacter pomeroyi DSS-3

Gene: SPO2674: DNA repair protein RadA
 
Roseobacter sp. MED193

Gene: MED193_06804: DNA repair protein RadA
*
Hyphomonas neptunium ATCC 15444

Site:
position = -294
score = 4.26663
sequence = GTCCATTTTTCGTTC

Gene: HNE_0720: DNA repair protein RadA
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_00845: DNA repair protein RadA
DNA repair protein RadA
 
CRON 9.
uvrD
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -56
score = 0.746879
sequence = GAACGATTGCGGAAC

Gene: RSP_2092: ATP-dependent DNA helicase II
 
Paracoccus denitrificans PD1222

Gene: Pden_4295: ATP-dependent DNA helicase II
*
Jannaschia sp. CCS1

Site:
position = -56
score = 1.49268
sequence = GAACAATCTGCGAAC

Gene: Jann_2777: ATP-dependent DNA helicase II
*
Rhodobacterales bacterium HTCC2654

Site:
position = -111
score = 1.32548
sequence = GAACATACCCTGAAC

Gene: RB2654_21543: ATP-dependent DNA helicase II
*
Oceanicola granulosus HTCC2516

Site:
position = -57
score = -0.0641964
sequence = GAACAGAGCGGGAAC

Gene: OG2516_00125: ATP-dependent DNA helicase II
*
Loktanella vestfoldensis SKA53

Site:
position = -55
score = 0.766889
sequence = GAACGGAAGTAGAAC

Gene: SKA53_07341: ATP-dependent DNA helicase II
 
Oceanicola batsensis HTCC2597

Gene: OB2597_16110: ATP-dependent DNA helicase II
*
Roseovarius nubinhibens ISM

Site:
position = -56
score = 0.395804
sequence = GAACAATCGCGGAAC

Gene: ISM_13365: ATP-dependent DNA helicase II
*
Roseovarius sp. 217

Site:
position = -56
score = 0.787447
sequence = GAACAATCCCCGAAC

Gene: ROS217_21917: ATP-dependent DNA helicase II
*
Sulfitobacter sp. EE-36

Site:
position = -55
score = 2.11499
sequence = GAACATTTTGCGAAC

Gene: EE36_17037: ATP-dependent DNA helicase II
*
Silicibacter TM1040

Site:
position = -57
score = 0.748084
sequence = GAACGGAGCGTGAAC

Gene: TM1040_2024: ATP-dependent DNA helicase II
*
Silicibacter pomeroyi DSS-3

Site:
position = -113
score = 1.05095
sequence = GAACAAGCCGTGAAC

Gene: SPO1174: ATP-dependent DNA helicase II
*
Roseobacter sp. MED193

Site:
position = -57
score = 1.32118
sequence = GAACAGAATGCGAAC

Gene: MED193_07538: ATP-dependent DNA helicase II
*
Hyphomonas neptunium ATCC 15444

Site:
position = -138
score = -0.893694
sequence = GAAAAAAGCGCAAAC

Gene: HNE_2938: ATP-dependent DNA helicase II
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_05351: ATP-dependent DNA helicase II
ATP-dependent DNA helicase II
 
CRON 10.
recA
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -64
score = 1.09996
sequence = GAACATAGGGCGAAC

Site:
position = -92
score = 4.97517
sequence = GTTCGCCTTATGATC

Gene: RSP_0452: Recombinase A
*
Paracoccus denitrificans PD1222

Site:
position = -77
score = 1.00035
sequence = GAACAACCCGTGAAC

Gene: Pden_0597: Recombinase A
*
Jannaschia sp. CCS1

Site:
position = -98
score = 0.617766
sequence = GAACAAGACAAGAAC

Site:
position = -127
score = 4.8742
sequence = GTTCTTGTTTTGTTT

Gene: Jann_1986: Recombinase A
*
Rhodobacterales bacterium HTCC2654

Site:
position = -56
score = 0.993872
sequence = GAACAAGAGGCGAAC

Gene: RB2654_03904: Recombinase A
*
Oceanicola granulosus HTCC2516

Site:
position = -63
score = 0.993872
sequence = GAACAAGAGGCGAAC

Site:
position = -91
score = 4.9924
sequence = GTTCTCTTTTTGGTC

Gene: OG2516_04603: Recombinase A
*
Loktanella vestfoldensis SKA53

Site:
position = -64
score = 1.2684
sequence = GAACATAAGGCGAAC

Site:
position = -91
score = 4.90627
sequence = GTTCATGTTTTGATC

Gene: SKA53_03339: Recombinase A
*
Oceanicola batsensis HTCC2597

Site:
position = -68
score = 0.993872
sequence = GAACAAGAGGCGAAC

Site:
position = -91
score = 4.92159
sequence = GTTCTTCTTTTGGTC

Gene: OB2597_01672: Recombinase A
*
Roseovarius nubinhibens ISM

Site:
position = -90
score = 0.703157
sequence = GAACAGCACGCGAAC

Site:
position = -118
score = 5.29805
sequence = GTTCTCATTTTGTGC

Gene: ISM_14955: Recombinase A
*
Roseovarius sp. 217

Site:
position = -66
score = 0.993872
sequence = GAACAAGAGGCGAAC

Site:
position = -94
score = 4.91895
sequence = GTTCTCTCTTTGTCC

Gene: ROS217_20887: Recombinase A
*
Sulfitobacter sp. EE-36

Site:
position = -82
score = 1.09581
sequence = GAACATAGAAAGAAC

Site:
position = -104
score = 5.11334
sequence = GTTCTCATTTTGATC

Gene: EE36_14243: Recombinase A
*
Silicibacter TM1040

Site:
position = -72
score = 0.482171
sequence = GAACAAGAGGAGAAC

Site:
position = -94
score = 4.75082
sequence = GTTCTTGTTTTGACC

Gene: TM1040_1230: Recombinase A
*
Silicibacter pomeroyi DSS-3

Site:
position = -87
score = 1.15335
sequence = GAACAAGAGGTGAAC

Site:
position = -109
score = 5.14712
sequence = GTTCTCTTTTTGATC

Gene: SPO2034: Recombinase A
*
Roseobacter sp. MED193

Site:
position = -93
score = 4.82446
sequence = GTTCTCCTTTTGACC

Gene: MED193_04366: Recombinase A
*
Hyphomonas neptunium ATCC 15444

Site:
position = -128
score = 4.64785
sequence = GTTTCTGCTTTGTTC

Gene: HNE_2742: Recombinase A
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -68
score = 1.54308
sequence = GAACAAAATAAGTAC

Site:
position = -86
score = 4.83148
sequence = GTTCCTGTTGCGTTC

Gene: OA2633_04776: Recombinase A
Recombinase A
 
CRON 11.
umuD
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
*
Sulfitobacter sp. EE-36

Site:
position = -154
score = 1.36047
sequence = GAACACATAGAGAAC

Gene: EE36_13253: DNA polymerase V, subunit UmuD
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
*2
Roseobacter sp. MED193

Site:
position = -30
score = 0.17592
sequence = GAACAAAGGCAGAAC

Gene: MED193_12418: DNA polymerase V, subunit UmuD

Site:
position = -44
score = 5.13855
sequence = GTTCACTTTATGTTC

Gene: MED193_12443: DNA polymerase V, subunit UmuD
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
DNA polymerase V, subunit UmuD
umuC
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_13258: DNA polymerase V, subunit UmuC
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 2
Roseobacter sp. MED193

Gene: MED193_12423: DNA polymerase V, subunit UmuC

Gene: MED193_12438: DNA polymerase V, subunit UmuC
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
DNA polymerase V, subunit UmuC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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