Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c 7 2
Xanthomonas axonopodis pv. citri str. 306 3 1
Xanthomonas campestris pv. campestris str. ATCC 33913 5 2
Stenotrophomonas maltophilia K279a 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
imuA
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC1197: Predicted RecA/RadA recombinase
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC1099: Predicted RecA/RadA recombinase
*
Stenotrophomonas maltophilia K279a

Site:
position = -145
score = 6.36845
sequence = TCATTAGTAATTCTACTCA

Gene: Smlt2926: Predicted RecA/RadA recombinase
Predicted RecA/RadA recombinase
imuB
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC1198: DNA polymerase-like protein PA0670
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC1100: DNA polymerase-like protein PA0670
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2927: DNA polymerase-like protein PA0670
DNA polymerase-like protein PA0670
dnaE2
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC1199: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC1101: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2928: DNA polymerase III alpha subunit (EC 2.7.7.7)
DNA polymerase III alpha subunit (EC 2.7.7.7)
 
CRON 2.
lexA
*
Xylella fastidiosa 9a5c

Site:
position = 15
score = 6.79348
sequence = TTATTAGTAATAATACTAA

Gene: XF0122: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -21
score = 7.01927
sequence = TTAGTAGTAATACTACTAA

Gene: XAC1739: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -21
score = 7.01927
sequence = TTAGTAGTAATACTACTAA

Gene: XCC1721: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Stenotrophomonas maltophilia K279a

Site:
position = 15
score = 7.01927
sequence = TTAGTAGTAATACTACTAA

Gene: Smlt1740: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
recA
 
Xylella fastidiosa 9a5c

Gene: XF0123: Recombinase A
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC1740: Recombinase A
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC1722: Recombinase A
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1741: Recombinase A
Recombinase A
recX
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC1741: Regulatory protein RecX
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC1723: Regulatory protein RecX
 
Stenotrophomonas maltophilia K279a

Gene: Smlt1742: Regulatory protein RecX
Regulatory protein RecX
 
CRON 3.
umuD
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -69
score = 6.14266
sequence = TTTTTAGTAATTTTGCTAA

Gene: XCC2963: DNA polymerase V, subunit UmuD
 
Stenotrophomonas maltophilia K279a
DNA polymerase V, subunit UmuD
umuC
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC2964: DNA polymerase V, subunit UmuC
 
Stenotrophomonas maltophilia K279a

Gene: Smlt3039: DNA polymerase V, subunit UmuC
DNA polymerase V, subunit UmuC
 
CRON 4.
XF2297
*
Xylella fastidiosa 9a5c

Site:
position = -140
score = 4.89697
sequence = GATTTAGTAAAATTACTAA

Gene: XF2313: Adenine DNA methyltransferase, phage-associated
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a
Adenine DNA methyltransferase, phage-associated
XF1669
 
Xylella fastidiosa 9a5c

Gene: XF2314: Phage-related lysozyme
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a
Phage-related lysozyme
XF2315
 
Xylella fastidiosa 9a5c

Gene: XF2315: Hypothetical protein
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a
Hypothetical protein
XF2316
 
Xylella fastidiosa 9a5c

Gene: XF2316: Hypothetical protein
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a
Hypothetical protein
XF2317
 
Xylella fastidiosa 9a5c

Gene: XF2317: Hypothetical protein
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Stenotrophomonas maltophilia K279a
Hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD