Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 101 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 16 11
Pseudomonas entomophila L48 18 14
Pseudomonas putida KT2440 20 16
Pseudomonas syringae pv. tomato str. DC3000 13 11
Pseudomonas fluorescens Pf-5 18 12
Pseudomonas mendocina ymp 20 12
Pseudomonas stutzeri A1501 18 12
Azotobacter vinelandii AvOP 7 5
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
umuD
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -46
score = 5.29579
sequence = ACTGTACGTCTATACAGT

Gene: PSPTOA0002: DNA polymerase V, subunit UmuD
*
Pseudomonas fluorescens Pf-5

Site:
position = -9
score = 5.23105
sequence = ACTGTATTTTTGTACAGT

Gene: PFL_4691: DNA polymerase V, subunit UmuD
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
DNA polymerase V, subunit UmuD
umuC
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO0591: DNA polymerase V, subunit UmuC
 2
Pseudomonas fluorescens Pf-5

Gene: PFL_4692: DNA polymerase V, subunit UmuC

Gene: PFL_2022: DNA polymerase V, subunit UmuC
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
DNA polymerase V, subunit UmuC
 
CRON 2.
PF07867
 
Pseudomonas aeruginosa PAO1

Gene: PA2381: Conserved hypothetical protein
*
Pseudomonas entomophila L48

Site:
position = -36
score = 5.62122
sequence = ACTGTATGCACATACAGC

Gene: PSEEN1950: Conserved hypothetical protein
*2
Pseudomonas putida KT2440

Site:
position = -36
score = 5.28986
sequence = ACTGTCTATGCATACAGT

Gene: PP3901: Conserved hypothetical protein

Site:
position = -36
score = 5.29588
sequence = ACTGTATGTGCATACAGC

Gene: PP2452: Conserved hypothetical protein
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -37
score = 4.83884
sequence = ACTGTATGCCCGTACAGC

Gene: PSPTO2365: Conserved hypothetical protein
*
Pseudomonas fluorescens Pf-5

Site:
position = -5
score = 5.274
sequence = ACTGTATGCACGTACAGC

Gene: PFL_2098: Conserved hypothetical protein
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Conserved hypothetical protein
 
CRON 3.
recN
*
Pseudomonas aeruginosa PAO1

Site:
position = -41
score = 5.86786
sequence = ACTGTATAAATAACCAGA

Gene: PA4763: DNA repair protein RecN
*
Pseudomonas entomophila L48

Site:
position = -41
score = 5.9906
sequence = ACTGTATAAATATCCAGA

Gene: PSEEN0776: DNA repair protein RecN
*
Pseudomonas putida KT2440

Site:
position = -41
score = 5.86786
sequence = ACTGTATAAATAACCAGA

Gene: PP4729: DNA repair protein RecN
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -40
score = 5.9906
sequence = ACTGTATAAATATCCAGA

Gene: PSPTO4507: DNA repair protein RecN
*
Pseudomonas fluorescens Pf-5

Site:
position = -41
score = 5.86786
sequence = ACTGTATAAATAACCAGA

Gene: PFL_0825: DNA repair protein RecN
*
Pseudomonas mendocina ymp

Site:
position = -40
score = 5.86786
sequence = ACTGTATAAATAACCAGA

Gene: Pmen_3626: DNA repair protein RecN
*
Pseudomonas stutzeri A1501

Site:
position = -41
score = 5.7179
sequence = ACTGTATAAATAGCCAGC

Gene: PST_3329: DNA repair protein RecN
*
Azotobacter vinelandii AvOP

Site:
position = -40
score = 5.91609
sequence = ACTGTATATATACACAGA

Gene: Avin_42990: DNA repair protein RecN
DNA repair protein RecN
 
CRON 4.
lexA
*
Pseudomonas aeruginosa PAO1

Site:
position = -45
score = 5.50544
sequence = ACTGTATATAATCCCAGT

Site:
position = -26
score = 5.39208
sequence = ACTGGATAAAAACACAGA

Gene: PA3007: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Pseudomonas entomophila L48

Site:
position = -47
score = 5.50544
sequence = ACTGTATATAATCCCAGT

Site:
position = -28
score = 5.74523
sequence = ACTGTATAAAAAGACAGA

Gene: PSEEN3721: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Pseudomonas putida KT2440

Site:
position = -46
score = 5.72602
sequence = ACTGTATATAATTCCAGT

Site:
position = -27
score = 5.40056
sequence = ACTGTACAAAAAGACAGA

Gene: PP2143: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -46
score = 5.50544
sequence = ACTGTATATAATCCCAGT

Site:
position = -27
score = 5.65486
sequence = ACTGTATAAAAAGCCAGA

Gene: PSPTO3510: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Pseudomonas fluorescens Pf-5

Site:
position = -46
score = 5.50544
sequence = ACTGTATATAATCCCAGT

Site:
position = -27
score = 5.74523
sequence = ACTGTATAAAAAGACAGA

Gene: PFL_1949: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Pseudomonas mendocina ymp

Site:
position = -45
score = 5.50544
sequence = ACTGTATATAATCCCAGT

Site:
position = -26
score = 5.74523
sequence = ACTGTATAAAAAGACAGA

Gene: Pmen_1587: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Pseudomonas stutzeri A1501

Site:
position = -215
score = 5.50544
sequence = ACTGTATATAATCCCAGT

Site:
position = -196
score = 5.51131
sequence = ACTGTATAAAAGAACAGA

Gene: PST_1734: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Azotobacter vinelandii AvOP

Site:
position = -46
score = 5.59581
sequence = ACTGTATATAATCACAGT

Site:
position = -27
score = 5.37662
sequence = ACTGGATAAAAAGACAGA

Gene: Avin_14510: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
sulA
 
Pseudomonas aeruginosa PAO1

Gene: PA3008: Cell division inhibitor sulA
 
Pseudomonas entomophila L48

Gene: PSEEN3722: Cell division inhibitor sulA
 
Pseudomonas putida KT2440

Gene: PP2142: Cell division inhibitor sulA
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3511: Cell division inhibitor sulA
 
Pseudomonas fluorescens Pf-5

Gene: PFL_1948: Cell division inhibitor sulA
 
Pseudomonas mendocina ymp

Gene: Pmen_1586: Cell division inhibitor sulA
 
Pseudomonas stutzeri A1501

Gene: PST_1733: Cell division inhibitor sulA
 
Azotobacter vinelandii AvOP

Gene: Avin_14500: Cell division inhibitor sulA
Cell division inhibitor sulA
 
CRON 5.
recA
*
Pseudomonas aeruginosa PAO1

Site:
position = -60
score = 5.59336
sequence = ACTGTCTACTTATACAGT

Gene: PA3617: Recombinase A
*
Pseudomonas entomophila L48

Site:
position = -60
score = 5.22474
sequence = ACTGGCTACTTATACAGT

Gene: PSEEN4128: Recombinase A
*
Pseudomonas putida KT2440

Site:
position = -60
score = 4.83933
sequence = ACTGGCTACTTATACAGG

Gene: PP1629: Recombinase A
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -67
score = 5.09849
sequence = ACTGTTTACTTATACAGG

Gene: PSPTO4033: Recombinase A
*
Pseudomonas fluorescens Pf-5

Site:
position = -57
score = 4.83933
sequence = ACTGGCTACTTATACAGG

Gene: PFL_1231: Recombinase A
*2
Pseudomonas mendocina ymp

Site:
position = -61
score = 5.22474
sequence = ACTGGCTACTTATACAGT

Gene: Pmen_3015: Recombinase A

Gene: Pmen_0425: Recombinase A
*
Pseudomonas stutzeri A1501

Site:
position = -57
score = 5.59336
sequence = ACTGTCTACTTATACAGT

Gene: PST_1508: Recombinase A
*
Azotobacter vinelandii AvOP

Site:
position = -60
score = 5.59336
sequence = ACTGTCTACTTATACAGT

Gene: Avin_38560: Recombinase A
Recombinase A
recX
 
Pseudomonas aeruginosa PAO1

Gene: PA3616: Regulatory protein RecX
 
Pseudomonas entomophila L48

Gene: PSEEN4127: Regulatory protein RecX
 
Pseudomonas putida KT2440

Gene: PP1630: Regulatory protein RecX
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4032: Regulatory protein RecX
 
Pseudomonas fluorescens Pf-5

Gene: PFL_1232: Regulatory protein RecX
 
Pseudomonas mendocina ymp

Gene: Pmen_3014: Regulatory protein RecX
 
Pseudomonas stutzeri A1501

Gene: PST_1509: Regulatory protein RecX
 
Azotobacter vinelandii AvOP

Gene: Avin_38550: Regulatory protein RecX
Regulatory protein RecX
 
CRON 6.
yebG
*
Pseudomonas aeruginosa PAO1

Site:
position = -57
score = 5.54602
sequence = ACTGTATGGATAACCAGT

Gene: PA3413: SOS regulon DNA damage-inducible protein
*
Pseudomonas entomophila L48

Site:
position = -59
score = 5.82613
sequence = ACTGTATAAAGATACAGT

Gene: PSEEN4605: SOS regulon DNA damage-inducible protein
*
Pseudomonas putida KT2440

Site:
position = -58
score = 5.88182
sequence = ACTGTATATAGATACAGT

Gene: PP4616: SOS regulon DNA damage-inducible protein
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -224
score = 5.88734
sequence = ACTGTATAAAAACACAGT

Gene: PSPTO1197: SOS regulon DNA damage-inducible protein
*
Pseudomonas fluorescens Pf-5

Site:
position = -111
score = 5.31655
sequence = CCTGTATATAGATACAGT

Gene: PFL_0975: SOS regulon DNA damage-inducible protein
*
Pseudomonas mendocina ymp

Site:
position = -57
score = 5.46856
sequence = ACTGTACAAACAACCAGT

Gene: Pmen_3241: SOS regulon DNA damage-inducible protein
*
Pseudomonas stutzeri A1501

Site:
position = -47
score = 5.27856
sequence = GCTGTACAAATAAACAGT

Gene: PST_3169: SOS regulon DNA damage-inducible protein
 
Azotobacter vinelandii AvOP
SOS regulon DNA damage-inducible protein
 
CRON 7.
PF04055
*
Pseudomonas aeruginosa PAO1

Site:
position = -37
score = 5.61187
sequence = ACTGTATCCATATACAGT

Gene: PA0069: DNA repair photolyase
*
Pseudomonas entomophila L48

Site:
position = -35
score = 5.67157
sequence = ACTGTATTCATATACAGT

Gene: PSEEN0052: DNA repair photolyase
*
Pseudomonas putida KT2440

Site:
position = -31
score = 5.96049
sequence = ACTGTATATTAATACAGT

Gene: PP0099: DNA repair photolyase
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -34
score = 5.29172
sequence = ACTGTACGGATAAACAGT

Gene: PSPTO5254: DNA repair photolyase
*
Pseudomonas fluorescens Pf-5

Site:
position = -32
score = 5.45919
sequence = ACTGTATGTGCATACAGT

Gene: PFL_0057: DNA repair photolyase
*
Pseudomonas mendocina ymp

Site:
position = -34
score = 5.45217
sequence = ACTGTTCATATATACAGT

Gene: Pmen_4466: DNA repair photolyase
*
Pseudomonas stutzeri A1501

Site:
position = 217
score = 5.97726
sequence = ACTGTATATATAAACAGC

Gene: PST_4159: DNA repair photolyase
 
Azotobacter vinelandii AvOP
DNA repair photolyase
 
CRON 8.
PFL_4225
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
*
Pseudomonas fluorescens Pf-5

Site:
position = -35
score = 5.80249
sequence = ACTGTATGCATATACAGC

Gene: PFL_4225: Hypothetical protein, putative peptidase
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Hypothetical protein, putative peptidase
PA0922
*
Pseudomonas aeruginosa PAO1

Site:
position = -69
score = 5.36839
sequence = ACTGTATATTCGTACAGC

Gene: PA0922: Predicted replication protein
*
Pseudomonas entomophila L48

Site:
position = -32
score = 5.70196
sequence = GCTGTATATAAATACAGT

Gene: PSEEN3760: Predicted replication protein
*
Pseudomonas putida KT2440

Site:
position = -32
score = 5.70196
sequence = GCTGTATATAAATACAGT

Gene: PP2109: Predicted replication protein
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4224: Predicted replication protein
*
Pseudomonas mendocina ymp

Site:
position = -75
score = 5.2465
sequence = ACTGTTTATTTGTACAGT

Gene: Pmen_2106: Predicted replication protein
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Predicted replication protein
 
CRON 9.
dinB
 
Pseudomonas aeruginosa PAO1

Gene: PA0923: DNA polymerase IV (EC 2.7.7.7)
*
Pseudomonas entomophila L48

Site:
position = -32
score = 5.3395
sequence = TCTGTATGAATTTACAGT

Gene: PSEEN4107: DNA polymerase IV (EC 2.7.7.7)
*
Pseudomonas putida KT2440

Site:
position = -32
score = 5.3395
sequence = TCTGTATGAATTTACAGT

Gene: PP1203: DNA polymerase IV (EC 2.7.7.7)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3990: DNA polymerase IV (EC 2.7.7.7)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_1254: DNA polymerase IV (EC 2.7.7.7)
 
Pseudomonas mendocina ymp

Gene: Pmen_1726: DNA polymerase IV (EC 2.7.7.7)
 
Pseudomonas stutzeri A1501

Gene: PST_2990: DNA polymerase IV (EC 2.7.7.7)
 
Azotobacter vinelandii AvOP

Gene: Avin_37100: DNA polymerase IV (EC 2.7.7.7)
DNA polymerase IV (EC 2.7.7.7)
 
CRON 10.
PSEEN2356
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -33
score = 5.44281
sequence = ACTGTATGAATAATCAGT

Gene: PSEEN2356: Radical SAM domain protein
*
Pseudomonas putida KT2440

Site:
position = -5
score = 5.34497
sequence = ACTGTATGAATACTCAGT

Gene: PP2924: Radical SAM domain protein
 
Pseudomonas syringae pv. tomato str. DC3000
*
Pseudomonas fluorescens Pf-5

Site:
position = -32
score = 6.04087
sequence = ACTGTATATAAAAACAGT

Gene: PFL_2524: Radical SAM domain protein
*
Pseudomonas mendocina ymp

Site:
position = -34
score = 5.98518
sequence = ACTGTATAAAAAAACAGT

Gene: Pmen_4146: Radical SAM domain protein
*
Pseudomonas stutzeri A1501

Site:
position = -7
score = 5.52414
sequence = ACTGTATATGCAAACAGT

Gene: PST_3962: Radical SAM domain protein
 
Azotobacter vinelandii AvOP
Radical SAM domain protein
PSEEN2355
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN2355: Domain often clustered or fused with uracil-DNA glycosylase
 
Pseudomonas putida KT2440

Gene: PP2923: Domain often clustered or fused with uracil-DNA glycosylase
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2624: Domain often clustered or fused with uracil-DNA glycosylase
 
Pseudomonas fluorescens Pf-5

Gene: PFL_2525: Domain often clustered or fused with uracil-DNA glycosylase
 
Pseudomonas mendocina ymp

Gene: Pmen_4147: Domain often clustered or fused with uracil-DNA glycosylase
 
Pseudomonas stutzeri A1501

Gene: PST_3963: Domain often clustered or fused with uracil-DNA glycosylase
 
Azotobacter vinelandii AvOP
Domain often clustered or fused with uracil-DNA glycosylase
 
CRON 11.
ruvC
 
Pseudomonas aeruginosa PAO1

Gene: PA0965: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
 
Pseudomonas entomophila L48

Gene: PSEEN4094: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
 
Pseudomonas putida KT2440

Gene: PP1215: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3979: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4765: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Pseudomonas mendocina ymp

Site:
position = -25
score = 5.60297
sequence = ACTGGATAAATAGACAGT

Gene: Pmen_1270: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Pseudomonas stutzeri A1501

Site:
position = -29
score = 5.43966
sequence = ACTGGATAAATAGACAGC

Gene: PST_2810: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
 
Azotobacter vinelandii AvOP

Gene: Avin_36710: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
 
Pseudomonas aeruginosa PAO1

Gene: PA0966: Holliday junction DNA helicase RuvA
 
Pseudomonas entomophila L48

Gene: PSEEN4093: Holliday junction DNA helicase RuvA
 
Pseudomonas putida KT2440

Gene: PP1216: Holliday junction DNA helicase RuvA
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3978: Holliday junction DNA helicase RuvA
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4764: Holliday junction DNA helicase RuvA
 
Pseudomonas mendocina ymp

Gene: Pmen_1271: Holliday junction DNA helicase RuvA
 
Pseudomonas stutzeri A1501

Gene: PST_2809: Holliday junction DNA helicase RuvA
 
Azotobacter vinelandii AvOP

Gene: Avin_36700: Holliday junction DNA helicase RuvA
Holliday junction DNA helicase RuvA
ruvB
 
Pseudomonas aeruginosa PAO1

Gene: PA0967: Holliday junction DNA helicase RuvB
 
Pseudomonas entomophila L48

Gene: PSEEN4092: Holliday junction DNA helicase RuvB
 
Pseudomonas putida KT2440

Gene: PP1217: Holliday junction DNA helicase RuvB
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3977: Holliday junction DNA helicase RuvB
 
Pseudomonas fluorescens Pf-5

Gene: PFL_4763: Holliday junction DNA helicase RuvB
 
Pseudomonas mendocina ymp

Gene: Pmen_1272: Holliday junction DNA helicase RuvB
 
Pseudomonas stutzeri A1501

Gene: PST_2808: Holliday junction DNA helicase RuvB
 
Azotobacter vinelandii AvOP

Gene: Avin_36690: Holliday junction DNA helicase RuvB
Holliday junction DNA helicase RuvB
 
CRON 12.
uvrB
 
Pseudomonas aeruginosa PAO1

Gene: PA3138: Excinuclease ABC subunit B
*
Pseudomonas entomophila L48

Site:
position = -43
score = 5.13477
sequence = ACTGGCTAAATTTACAGT

Gene: PSEEN1636: Excinuclease ABC subunit B
*
Pseudomonas putida KT2440

Site:
position = -39
score = 4.97146
sequence = ACTGGCTAAATTTACAGC

Gene: PP1974: Excinuclease ABC subunit B
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2164: Excinuclease ABC subunit B
 
Pseudomonas fluorescens Pf-5

Gene: PFL_2046: Excinuclease ABC subunit B
 
Pseudomonas mendocina ymp

Gene: Pmen_2737: Excinuclease ABC subunit B
 
Pseudomonas stutzeri A1501

Gene: PST_2997: Excinuclease ABC subunit B
 
Azotobacter vinelandii AvOP

Gene: Avin_20100: Excinuclease ABC subunit B
Excinuclease ABC subunit B
 
CRON 13.
PF08774
*
Pseudomonas aeruginosa PAO1

Site:
position = -5
score = 5.16262
sequence = TCTGTATGCATGAACAGT

Gene: PA1865: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
*
Pseudomonas entomophila L48

Site:
position = -45
score = 5.52929
sequence = TCTGTATGTATAACCAGT

Gene: PSEEN2643: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
*
Pseudomonas putida KT2440

Site:
position = -46
score = 5.61966
sequence = TCTGTATGTATAAACAGT

Gene: PP2838: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -22
score = 4.86812
sequence = TCTGTACGGATAACCAGT

Gene: PSPTO3272: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
*
Pseudomonas fluorescens Pf-5

Site:
position = -37
score = 5.41947
sequence = TCTGTATGCATAACCAGT

Gene: PFL_3199: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
*
Pseudomonas mendocina ymp

Site:
position = -21
score = 5.56158
sequence = TCTGTATAAAAAACCAGT

Gene: Pmen_4110: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
*
Pseudomonas stutzeri A1501

Site:
position = -60
score = 5.7179
sequence = ACTGTATAAATAGCCAGC

Gene: PST_2108: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
 
Azotobacter vinelandii AvOP

Gene: Avin_23850: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
Hypothetical protein, restriction endonuclease-like VRR-NUC domain
COG1199
 
Pseudomonas aeruginosa PAO1

Gene: PA1866: Rad3-related DNA helicases
 
Pseudomonas entomophila L48

Gene: PSEEN2644: Rad3-related DNA helicases
 
Pseudomonas putida KT2440

Gene: PP2839: Rad3-related DNA helicases
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3036: Rad3-related DNA helicases
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3198: Rad3-related DNA helicases
 
Pseudomonas mendocina ymp

Gene: Pmen_4111: Rad3-related DNA helicases
 
Pseudomonas stutzeri A1501

Gene: PST_2107: Rad3-related DNA helicases
 
Azotobacter vinelandii AvOP
Rad3-related DNA helicases
 
CRON 14.
imuA
*
Pseudomonas aeruginosa PAO1

Site:
position = -153
score = 5.60012
sequence = ACTGTATTTACATACAGT

Gene: PA0671: Predicted RecA/RadA recombinase
 
Pseudomonas entomophila L48

Gene: PSEEN2413: Predicted RecA/RadA recombinase
 
Pseudomonas putida KT2440

Gene: PP3117: Predicted RecA/RadA recombinase
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2793: Predicted RecA/RadA recombinase
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3699: Predicted RecA/RadA recombinase
*
Pseudomonas mendocina ymp

Site:
position = -37
score = 5.72977
sequence = ACTGTATGCATAGACAGT

Gene: Pmen_1936: Predicted RecA/RadA recombinase
*
Pseudomonas stutzeri A1501

Site:
position = 24
score = 5.72169
sequence = ACTGTATCTATATACAGT

Gene: PST_2344: Predicted RecA/RadA recombinase
 
Azotobacter vinelandii AvOP
Predicted RecA/RadA recombinase
imuB
 
Pseudomonas aeruginosa PAO1

Gene: PA0670: DNA polymerase-like protein PA0670
 
Pseudomonas entomophila L48

Gene: PSEEN2414: DNA polymerase-like protein PA0670
 
Pseudomonas putida KT2440

Gene: PP3118: DNA polymerase-like protein PA0670
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2794: DNA polymerase-like protein PA0670
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3698: DNA polymerase-like protein PA0670
 
Pseudomonas mendocina ymp

Gene: Pmen_1935: DNA polymerase-like protein PA0670
 
Pseudomonas stutzeri A1501

Gene: PST_2346: DNA polymerase-like protein PA0670
 
Azotobacter vinelandii AvOP
DNA polymerase-like protein PA0670
dnaE2
 
Pseudomonas aeruginosa PAO1

Gene: PA0669: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas entomophila L48

Gene: PSEEN2415: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas putida KT2440

Gene: PP_3119: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2795: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3697: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas mendocina ymp

Gene: Pmen_1934: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas stutzeri A1501

Gene: PST_2347: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Azotobacter vinelandii AvOP
DNA polymerase III alpha subunit (EC 2.7.7.7)
 
CRON 15.
topB
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -86
score = 5.61072
sequence = ACTGTACATACATACAGA

Gene: PSEEN2193: DNA topoisomerase III (EC 5.99.1.2)
*
Pseudomonas putida KT2440

Site:
position = -86
score = 4.51991
sequence = CCTGTACATCCATCCAGA

Gene: PP4019: DNA topoisomerase III (EC 5.99.1.2)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -87
score = 5.18701
sequence = TCTGTATATCCATACAGA

Gene: PSPTO2478: DNA topoisomerase III (EC 5.99.1.2)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*
Pseudomonas stutzeri A1501

Site:
position = -184
score = 5.33254
sequence = ACTGTATGTCCATACAGA

Gene: PST_2913: DNA topoisomerase III (EC 5.99.1.2)
*
Azotobacter vinelandii AvOP

Site:
position = -75
score = 5.11799
sequence = TCTGTATGGACATACAGA

Gene: Avin_27190: DNA topoisomerase III (EC 5.99.1.2)
DNA topoisomerase III (EC 5.99.1.2)
 
CRON 16.
dinG
*
Pseudomonas aeruginosa PAO1

Site:
position = -70
score = 5.15255
sequence = ACTGAAAATTTATCCAGC

Gene: PA1045: ATP-dependent helicase DinG/Rad3
*
Pseudomonas entomophila L48

Site:
position = -38
score = 5.35567
sequence = ACTGAAAATATATCCAGC

Gene: PSEEN1273: ATP-dependent helicase DinG/Rad3
*
Pseudomonas putida KT2440

Site:
position = -38
score = 5.35567
sequence = ACTGAAAATATATCCAGC

Gene: PP1125: ATP-dependent helicase DinG/Rad3
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -48
score = 5.15255
sequence = ACTGAAAATTTATCCAGC

Gene: PSPTO4120: ATP-dependent helicase DinG/Rad3
*
Pseudomonas fluorescens Pf-5

Site:
position = -39
score = 5.15255
sequence = ACTGAAAATTTATCCAGC

Gene: PFL_1279: ATP-dependent helicase DinG/Rad3
*
Pseudomonas mendocina ymp

Site:
position = -37
score = 5.15255
sequence = ACTGAAAATTTATCCAGC

Gene: Pmen_1427: ATP-dependent helicase DinG/Rad3
*
Pseudomonas stutzeri A1501

Site:
position = -120
score = 5.44604
sequence = ACTGAAAATATATACAGC

Gene: PST_1523: ATP-dependent helicase DinG/Rad3
*
Azotobacter vinelandii AvOP

Site:
position = -36
score = 4.96864
sequence = ACTGAAAATTTGTCCAGT

Gene: Avin_19450: ATP-dependent helicase DinG/Rad3
ATP-dependent helicase DinG/Rad3
 
CRON 17.
PF07130
*
Pseudomonas aeruginosa PAO1

Site:
position = -57
score = 5.54602
sequence = ACTGTATGGATAACCAGT

Gene: PA3413: Conserved hypothetical protein
*
Pseudomonas entomophila L48

Site:
position = -59
score = 5.82613
sequence = ACTGTATAAAGATACAGT

Gene: PSEEN4605: Conserved hypothetical protein
*
Pseudomonas putida KT2440

Site:
position = -58
score = 5.88182
sequence = ACTGTATATAGATACAGT

Gene: PP4616: Conserved hypothetical protein
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -224
score = 5.88734
sequence = ACTGTATAAAAACACAGT

Gene: PSPTO1197: Conserved hypothetical protein
*
Pseudomonas fluorescens Pf-5

Site:
position = -111
score = 5.31655
sequence = CCTGTATATAGATACAGT

Gene: PFL_0975: Conserved hypothetical protein
*
Pseudomonas mendocina ymp

Site:
position = -57
score = 5.46856
sequence = ACTGTACAAACAACCAGT

Gene: Pmen_3241: Conserved hypothetical protein
*
Pseudomonas stutzeri A1501

Site:
position = -47
score = 5.27856
sequence = GCTGTACAAATAAACAGT

Gene: PST_3169: Conserved hypothetical protein
 
Azotobacter vinelandii AvOP
Conserved hypothetical protein
 
CRON 18.
PA2288
*
Pseudomonas aeruginosa PAO1

Site:
position = -58
score = 5.67272
sequence = ACTGTATGAATGTACAGT

Gene: PA2288: Hypothetical protein
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Hypothetical protein
 
CRON 19.
PF07867
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
*
Pseudomonas putida KT2440

Site:
position = 9
score = 5.51195
sequence = ACTGTACGAATATACAGC

Gene: PP3773: Hypothetical protein
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD