Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Trp) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Trp-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 2
Bacillus amyloliquefaciens FZB42 1 1
Bacillus pumilus SAFR-032 1 1
Bacillus licheniformis DSM 13 3 2
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 1 1
Bacillus cereus ATCC 14579 9 3
Bacillus halodurans C-125 1 1
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831 8 2
Paenibacillus sp. JDR-2 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
trpS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -274
score = 135.96
sequence = AAAGCTTGCTATGAA...

Gene: BSU11420: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -268
score = 120.77
sequence = TGTGATTGCGATGAT...

Gene: RBAM_011420: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*
Bacillus pumilus SAFR-032

Site:
position = -273
score = 126.75
sequence = TACTGTTGCGATGAA...

Gene: BPUM_1068: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*
Bacillus licheniformis DSM 13

Site:
position = -275
score = 136.94
sequence = ATAACATGCGATGAA...

Gene: BLi01231: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*2
Anoxybacillus flavithermus WK1

Site:
position = -274
score = 141.07
sequence = CCGATGCGATGACGA...

Gene: Aflv_2135: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)

Gene: Aflv_2446: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*
Geobacillus kaustophilus HTA426

Site:
position = -286
score = 125.28
sequence = CAACCGAGCGATGAG...

Gene: GK0809: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*
Bacillus cereus ATCC 14579

Site:
position = -253
score = 136.38
sequence = CGAAAAAGCAATGAA...

Gene: BC3340: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*2
Bacillus halodurans C-125

Gene: BH2870: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)

Site:
position = -404
score = 119.89
sequence = TATGTTTGCAATGAT...

Gene: BH2200: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*2
Bacillus clausii KSM-K16

Site:
position = -306
score = 115.24
sequence = TTTAAGCGATGAAGA...

Gene: ABC0274: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)

Gene: ABC2535: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*
Oceanobacillus iheyensis HTE831

Site:
position = -228
score = 98.32
sequence = ATACGAAGCATTGAA...

Gene: OB1208: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
*2
Paenibacillus sp. JDR-2

Site:
position = -311
score = 124.88
sequence = AACTTGCGATGATGA...

Gene: Pjdr2_1924: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)

Site:
position = -339
score = 89.33
sequence = ACGAAATGCGATGAA...

Gene: Pjdr2_4883: Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
 
CRON 2.
trpE
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22680: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020840: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Bacillus pumilus SAFR-032

Gene: BPUM_1999: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Bacillus licheniformis DSM 13

Gene: BLi02403: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1101: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Geobacillus kaustophilus HTA426

Gene: GK2204: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Bacillus cereus ATCC 14579

Site:
position = -286
score = 120.69
sequence = TGAAATCGTTTAAGT...

Gene: BC1232: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Bacillus halodurans C-125

Gene: BH1659: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Bacillus clausii KSM-K16

Gene: ABC1895: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Oceanobacillus iheyensis HTE831

Site:
position = -322
score = 135.73
sequence = TGCAAAATCATTGAG...

Gene: OB0527: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2417: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
trpG
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC1233: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831

Gene: OB0526: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Paenibacillus sp. JDR-2
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
trpD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22670: anthranilate phosphoribosyltransferase
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020830: anthranilate phosphoribosyltransferase
 
Bacillus pumilus SAFR-032

Gene: BPUM_1998: anthranilate phosphoribosyltransferase
 
Bacillus licheniformis DSM 13

Gene: BLi02402: anthranilate phosphoribosyltransferase
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1102: anthranilate phosphoribosyltransferase
 
Geobacillus kaustophilus HTA426

Gene: GK2203: anthranilate phosphoribosyltransferase
 
Bacillus cereus ATCC 14579

Gene: BC1234: anthranilate phosphoribosyltransferase
 
Bacillus halodurans C-125

Gene: BH1660: anthranilate phosphoribosyltransferase
 
Bacillus clausii KSM-K16

Gene: ABC1896: anthranilate phosphoribosyltransferase
 
Oceanobacillus iheyensis HTE831

Gene: OB0525: anthranilate phosphoribosyltransferase
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2418: anthranilate phosphoribosyltransferase
anthranilate phosphoribosyltransferase
trpC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22660: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020820: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1997: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Bacillus licheniformis DSM 13

Gene: BLi02401: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1103: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Geobacillus kaustophilus HTA426

Gene: GK2202: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Bacillus cereus ATCC 14579

Gene: BC1235: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Bacillus halodurans C-125

Gene: BH1661: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Bacillus clausii KSM-K16

Gene: ABC1897: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Oceanobacillus iheyensis HTE831

Gene: OB0524: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2419: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
trpF
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22650: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020810: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1996: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Bacillus licheniformis DSM 13

Gene: BLi02400: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1104: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Geobacillus kaustophilus HTA426

Gene: GK2201: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Bacillus cereus ATCC 14579

Gene: BC1236: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Bacillus halodurans C-125

Gene: BH1662: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Bacillus clausii KSM-K16

Gene: ABC1898: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Oceanobacillus iheyensis HTE831

Gene: OB0523: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2420: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
trpB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22640: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020800: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1995: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Bacillus licheniformis DSM 13

Gene: BLi02399: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1105: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Geobacillus kaustophilus HTA426

Gene: GK2200: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Bacillus cereus ATCC 14579

Gene: BC1237: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Bacillus halodurans C-125

Gene: BH1663: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Bacillus clausii KSM-K16

Gene: ABC1899: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Oceanobacillus iheyensis HTE831

Gene: OB0522: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2421: Tryptophan synthase beta chain (EC 4.2.1.20)
Tryptophan synthase beta chain (EC 4.2.1.20)
trpA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22630: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_020790: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1994: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Bacillus licheniformis DSM 13

Gene: BLi02398: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1106: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Geobacillus kaustophilus HTA426

Gene: GK2199: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Bacillus cereus ATCC 14579

Gene: BC1238: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Bacillus halodurans C-125

Gene: BH1664: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Bacillus clausii KSM-K16

Gene: ABC1900: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Oceanobacillus iheyensis HTE831

Gene: OB0521: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2422: Tryptophan synthase alpha chain (EC 4.2.1.20)
Tryptophan synthase alpha chain (EC 4.2.1.20)
 
CRON 3.
rtpA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -344
score = 122.26
sequence = TAACAATCGTGAGGA...

Gene: BSU02530: Anti-TRAP regulator
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -357
score = 123.37
sequence = AAACGATATTGAAGA...

Gene: BLi00308: Anti-TRAP regulator
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Anti-TRAP regulator
ycbK
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU02540: Permeases of the drug/metabolite transporter (DMT) superfamily
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi00309: Permeases of the drug/metabolite transporter (DMT) superfamily
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Permeases of the drug/metabolite transporter (DMT) superfamily
 
CRON 4.
yhdH
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -356
score = 111.09
sequence = TGAAATCGATGAGCA...

Gene: BC1430: Sodium-dependent tryptophan transporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Sodium-dependent tryptophan transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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