Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Trp) - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Trp-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 7 1
Staphylococcus capitis SK14 7 1
Staphylococcus epidermidis ATCC 12228 7 1
Staphylococcus carnosus subsp. carnosus TM300 7 1
Staphylococcus haemolyticus JCSC1435 7 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 7 1
Macrococcus caseolyticus JCSC5402
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
trpE
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -432
score = 70.61
sequence = AGAATTTTCTAAAGA...

Site:
position = -228
score = 66.62
sequence = TTTAGACAAAATGTA...

Gene: SA1199: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Staphylococcus capitis SK14

Site:
position = -419
score = 63.55
sequence = TAATTTGAATGAATA...

Site:
position = -220
score = 62.59
sequence = TTTAAGCAAAATGTA...

Gene: STACA0001_1613: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -412
score = 62.24
sequence = TAATTTGATTGATAG...

Site:
position = -220
score = 66.05
sequence = TTGAAGCAAAGTGAA...

Gene: SE1048: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -227
score = 74.73
sequence = ATGAGATAAAATGAA...

Gene: Sca_1012: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -233
score = 63.65
sequence = TAAATAGGCATAAAT...

Site:
position = -446
score = 62.95
sequence = AAACAATTCTATGAA...

Gene: SH1542: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -233
score = 70.63
sequence = TTAGAAAACAAAATG...

Gene: SSP1379: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
 
Macrococcus caseolyticus JCSC5402
Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa
trpG
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1200: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Staphylococcus capitis SK14

Gene: STACA0001_1614: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1049: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1013: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1541: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1378: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
 
Macrococcus caseolyticus JCSC5402
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb
trpD
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1201: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Staphylococcus capitis SK14

Gene: STACA0001_1615: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1050: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1014: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1540: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1377: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
 
Macrococcus caseolyticus JCSC5402
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
trpC
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1202: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Staphylococcus capitis SK14

Gene: STACA0001_1616: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1051: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1015: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1539: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1376: Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
 
Macrococcus caseolyticus JCSC5402
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)
trpF
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1203: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Staphylococcus capitis SK14

Gene: STACA0001_1617: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1052: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1016: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1538: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1375: Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
 
Macrococcus caseolyticus JCSC5402
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)
trpB
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1204: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Staphylococcus capitis SK14

Gene: STACA0001_1618: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1053: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1017: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1537: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1374: Tryptophan synthase beta chain (EC 4.2.1.20)
 
Macrococcus caseolyticus JCSC5402
Tryptophan synthase beta chain (EC 4.2.1.20)
trpA
 
Staphylococcus aureus subsp. aureus N315

Gene: SA1205: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Staphylococcus capitis SK14

Gene: STACA0001_1619: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Staphylococcus epidermidis ATCC 12228

Gene: SE1054: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Staphylococcus carnosus subsp. carnosus TM300

Gene: Sca_1018: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Staphylococcus haemolyticus JCSC1435

Gene: SH1536: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Gene: SSP1373: Tryptophan synthase alpha chain (EC 4.2.1.20)
 
Macrococcus caseolyticus JCSC5402
Tryptophan synthase alpha chain (EC 4.2.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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