Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Leu) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Leu-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 9 3
Bacillus amyloliquefaciens FZB42 9 3
Bacillus pumilus SAFR-032 10 4
Bacillus licheniformis DSM 13 9 3
Anoxybacillus flavithermus WK1 8 2
Geobacillus kaustophilus HTA426 8 2
Bacillus cereus ATCC 14579 2 2
Bacillus halodurans C-125 8 2
Bacillus clausii KSM-K16 8 2
Oceanobacillus iheyensis HTE831 3 2
Paenibacillus sp. JDR-2 7 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ilvB
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -369
score = 111.75
sequence = ATGAAAAGCGCAGAT...

Gene: BSU28310: Acetolactate synthase large subunit (EC 2.2.1.6)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -303
score = 118.6
sequence = ATAAAAAGCGCAGAA...

Gene: RBAM_025370: Acetolactate synthase large subunit (EC 2.2.1.6)
*
Bacillus pumilus SAFR-032

Site:
position = -370
score = 127.91
sequence = TCGATAAACGTTGAA...

Gene: BPUM_2472: Acetolactate synthase large subunit (EC 2.2.1.6)
*
Bacillus licheniformis DSM 13

Site:
position = -421
score = 97.53
sequence = AAGATAAACGTTGAA...

Gene: BLi02961: Acetolactate synthase large subunit (EC 2.2.1.6)
*
Anoxybacillus flavithermus WK1

Site:
position = -234
score = 97.71
sequence = AAAAAGCGTTGAAGA...

Gene: Aflv_0591: Acetolactate synthase large subunit (EC 2.2.1.6)
*
Geobacillus kaustophilus HTA426

Site:
position = -287
score = 93.0
sequence = CGAAAAAGCGTTGAC...

Gene: GK2661: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -362
score = 115.65
sequence = TTTTAACACGTTGAA...

Gene: BH3061: Acetolactate synthase large subunit (EC 2.2.1.6)
*
Bacillus clausii KSM-K16

Site:
position = -332
score = 122.5
sequence = CGATAACACAATGAA...

Gene: ABC2645: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Oceanobacillus iheyensis HTE831

Gene: OB2623: Acetolactate synthase large subunit (EC 2.2.1.6)
*3
Paenibacillus sp. JDR-2

Site:
position = -353
score = 84.62
sequence = TATCGGCAATGATGA...

Gene: Pjdr2_1302: Acetolactate synthase large subunit (EC 2.2.1.6)

Site:
position = -332
score = 87.73
sequence = AAAAGAAGCGTGGAA...

Gene: Pjdr2_4086: Acetolactate synthase large subunit (EC 2.2.1.6)

Gene: Pjdr2_2907: Acetolactate synthase large subunit (EC 2.2.1.6)
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvH
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28300: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025360: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2471: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus licheniformis DSM 13

Gene: BLi02960: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0592: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Geobacillus kaustophilus HTA426

Gene: GK2660: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus cereus ATCC 14579

Gene: BC1398: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus halodurans C-125

Gene: BH3060: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Bacillus clausii KSM-K16

Gene: ABC2644: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Oceanobacillus iheyensis HTE831

Gene: OB2622: Acetolactate synthase small subunit (EC 2.2.1.6)
 2
Paenibacillus sp. JDR-2

Gene: Pjdr2_1303: Acetolactate synthase small subunit (EC 2.2.1.6)

Gene: Pjdr2_2908: Acetolactate synthase small subunit (EC 2.2.1.6)
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28290: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025350: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2470: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus licheniformis DSM 13

Gene: BLi02959: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0593: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Geobacillus kaustophilus HTA426

Gene: GK2659: Ketol-acid reductoisomerase (EC 1.1.1.86)
 2
Bacillus cereus ATCC 14579

Gene: BC1779: Ketol-acid reductoisomerase (EC 1.1.1.86)

Gene: BC1399: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus halodurans C-125

Gene: BH3059: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Bacillus clausii KSM-K16

Gene: ABC2643: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Oceanobacillus iheyensis HTE831

Gene: OB2621: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1304: Ketol-acid reductoisomerase (EC 1.1.1.86)
Ketol-acid reductoisomerase (EC 1.1.1.86)
leuA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28280: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025340: 2-isopropylmalate synthase (EC 2.3.3.13)
*2
Bacillus pumilus SAFR-032

Gene: BPUM_2469: 2-isopropylmalate synthase (EC 2.3.3.13)

Site:
position = -322
score = 120.64
sequence = TGAGAATGCGATGAT...

Gene: BPUM_0582: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus licheniformis DSM 13

Gene: BLi02958: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0594: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Geobacillus kaustophilus HTA426

Gene: GK2658: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus cereus ATCC 14579

Gene: BC1400: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus halodurans C-125

Gene: BH3058: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Bacillus clausii KSM-K16

Gene: ABC2642: 2-isopropylmalate synthase (EC 2.3.3.13)
 
Oceanobacillus iheyensis HTE831

Gene: OB2620: 2-isopropylmalate synthase (EC 2.3.3.13)
*2
Paenibacillus sp. JDR-2

Site:
position = -364
score = 56.21
sequence = ATTGAACGAACAGGC...

Gene: Pjdr2_1026: 2-isopropylmalate synthase (EC 2.3.3.13)

Gene: Pjdr2_1305: 2-isopropylmalate synthase (EC 2.3.3.13)
2-isopropylmalate synthase (EC 2.3.3.13)
leuB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28270: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025330: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2468: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus licheniformis DSM 13

Gene: BLi02957: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0595: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Geobacillus kaustophilus HTA426

Gene: GK2657: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus cereus ATCC 14579

Gene: BC1401: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus halodurans C-125

Gene: BH3057: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Bacillus clausii KSM-K16

Gene: ABC2641: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Oceanobacillus iheyensis HTE831

Gene: OB2619: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
 
Paenibacillus sp. JDR-2
3-isopropylmalate dehydrogenase (EC 1.1.1.85)
leuC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28260: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025320: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2467: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus licheniformis DSM 13

Gene: BLi02956: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0596: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Geobacillus kaustophilus HTA426

Gene: GK2656: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus cereus ATCC 14579

Gene: BC1402: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus halodurans C-125

Gene: BH3056: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bacillus clausii KSM-K16

Gene: ABC2640: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Oceanobacillus iheyensis HTE831

Gene: OB2618: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2473: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
leuD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU28250: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025310: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2466: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus licheniformis DSM 13

Gene: BLi02955: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0597: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Geobacillus kaustophilus HTA426

Gene: GK2655: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus cereus ATCC 14579

Gene: BC1403: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus halodurans C-125

Gene: BH3055: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bacillus clausii KSM-K16

Gene: ABC2639: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Oceanobacillus iheyensis HTE831

Gene: OB2617: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2474: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
CRON 2.
leuS
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -325
score = 142.98
sequence = GATAAGAACAATGAA...

Gene: BSU30320: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -323
score = 132.69
sequence = GATAAGAACAGTGAA...

Gene: RBAM_027250: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Bacillus pumilus SAFR-032

Site:
position = -185
score = 123.18
sequence = GATAAGAACAGTGAA...

Gene: BPUM_2669: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Bacillus licheniformis DSM 13

Site:
position = -320
score = 138.26
sequence = GGCAAGAACAGTGAA...

Gene: BLi03175: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Anoxybacillus flavithermus WK1

Site:
position = -274
score = 147.3
sequence = AAATGACGGTGAAAA...

Gene: Aflv_0425: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Geobacillus kaustophilus HTA426

Site:
position = -298
score = 111.68
sequence = GCGAATAACGGTGAA...

Gene: GK2842: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Bacillus cereus ATCC 14579

Site:
position = -286
score = 147.43
sequence = TGTAATAACAGTGAG...

Gene: BC4737: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Bacillus halodurans C-125

Site:
position = -391
score = 116.55
sequence = TGAAAAAACAGTGAC...

Gene: BH3281: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Bacillus clausii KSM-K16

Site:
position = -269
score = 117.85
sequence = GGGAAATACAAGGAT...

Gene: ABC2871: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Oceanobacillus iheyensis HTE831

Site:
position = -303
score = 125.78
sequence = ATTAACGACTATGAT...

Gene: OB2307: Leucyl-tRNA synthetase (EC 6.1.1.4)
*
Paenibacillus sp. JDR-2

Site:
position = -287
score = 119.78
sequence = TAATGGCGTTGAAGA...

Gene: Pjdr2_2189: Leucyl-tRNA synthetase (EC 6.1.1.4)
Leucyl-tRNA synthetase (EC 6.1.1.4)
 
CRON 3.
yocR
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -365
score = 107.7
sequence = ACAATGTGTTGAATA...

Gene: BC2170: Sodium-dependent leucine transporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Sodium-dependent leucine transporter
 
CRON 4.
yuaI
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU31000: Acetyltransferase, GNAT family
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_2727: Acetyltransferase, GNAT family
 
Bacillus licheniformis DSM 13

Gene: BLi02771: Acetyltransferase, GNAT family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK0964: Acetyltransferase, GNAT family
 
Bacillus cereus ATCC 14579

Gene: BC1977: Acetyltransferase, GNAT family
 
Bacillus halodurans C-125

Gene: BH2157: Acetyltransferase, GNAT family
 
Bacillus clausii KSM-K16

Gene: ABC3305: Acetyltransferase, GNAT family
*
Oceanobacillus iheyensis HTE831

Site:
position = -254
score = 125.13
sequence = TATAGGCAATGAAGA...

Gene: OB1271: Acetyltransferase, GNAT family
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1269: Acetyltransferase, GNAT family
Acetyltransferase, GNAT family
BC4195
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC4195: Predicted acetyltransferase
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831

Gene: OB1272: Predicted acetyltransferase
 
Paenibacillus sp. JDR-2
Predicted acetyltransferase
 
CRON 5.
yvbW
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -305
score = 117.89
sequence = CTAAAACACATAGAT...

Gene: BSU34010: Amino acid permease
*
Bacillus amyloliquefaciens FZB42

Site:
position = -302
score = 106.94
sequence = ATAAAACACTGTGAA...

Gene: RBAM_031370: Amino acid permease
*
Bacillus pumilus SAFR-032

Site:
position = -302
score = 120.82
sequence = ATAAAACGCTTTGAC...

Gene: BPUM_3159: Amino acid permease
*
Bacillus licheniformis DSM 13

Site:
position = -318
score = 100.17
sequence = AGAAAACACAATGAA...

Gene: BLi03669: Amino acid permease
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Amino acid permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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