Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Asp) - Bacillales

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Asp-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426 2 1
Bacillus cereus ATCC 14579 3 2
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831 2 1
Paenibacillus sp. JDR-2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hisS
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU27560: Histidyl-tRNA synthetase (EC 6.1.1.21)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_024670: Histidyl-tRNA synthetase (EC 6.1.1.21)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi02882: Histidyl-tRNA synthetase (EC 6.1.1.21)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0730: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Geobacillus kaustophilus HTA426

Site:
position = -279
score = 123.99
sequence = GGAACAACCGATGAT...

Gene: GK2573: Histidyl-tRNA synthetase (EC 6.1.1.21)
*2
Bacillus cereus ATCC 14579

Site:
position = -301
score = 127.15
sequence = AATATAACCGTTGAT...

Gene: BC4398: Histidyl-tRNA synthetase (EC 6.1.1.21)

Gene: BC3317: Histidyl-tRNA synthetase (EC 6.1.1.21)
 
Bacillus halodurans C-125

Gene: BH1251: Histidyl-tRNA synthetase (EC 6.1.1.21)
 2
Bacillus clausii KSM-K16

Gene: ABC3310: Histidyl-tRNA synthetase (EC 6.1.1.21)

Gene: ABC1576: Histidyl-tRNA synthetase (EC 6.1.1.21)
*
Oceanobacillus iheyensis HTE831

Site:
position = -281
score = 128.27
sequence = CGTACAACCGTTGAA...

Gene: OB2020: Histidyl-tRNA synthetase (EC 6.1.1.21)
*2
Paenibacillus sp. JDR-2

Gene: Pjdr2_0932: Histidyl-tRNA synthetase (EC 6.1.1.21)

Site:
position = -495
score = 78.8
sequence = TTCTGATTCGTTGAT...

Gene: Pjdr2_4376: Histidyl-tRNA synthetase (EC 6.1.1.21)
Histidyl-tRNA synthetase (EC 6.1.1.21)
aspS
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU27550: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_024660: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2396: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Bacillus licheniformis DSM 13

Gene: BLi02881: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0731: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Geobacillus kaustophilus HTA426

Gene: GK2572: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Bacillus cereus ATCC 14579

Gene: BC4397: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Bacillus halodurans C-125

Gene: BH1252: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Bacillus clausii KSM-K16

Gene: ABC1577: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Oceanobacillus iheyensis HTE831

Gene: OB2019: Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4375: Aspartyl-tRNA synthetase (EC 6.1.1.12)
Aspartyl-tRNA synthetase (EC 6.1.1.12)
 
CRON 2.
asnS3
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -317
score = 135.8
sequence = AAAAAGTGATGATCA...

Gene: BC2169: Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD