Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog L21_leader - Bacillales

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 1
Bacillus amyloliquefaciens FZB42 3 1
Bacillus pumilus SAFR-032 3 1
Bacillus licheniformis DSM 13 3 1
Anoxybacillus flavithermus WK1 3 1
Geobacillus kaustophilus HTA426 3 1
Bacillus cereus ATCC 14579 3 1
Bacillus halodurans C-125 3 1
Bacillus clausii KSM-K16 3 1
Oceanobacillus iheyensis HTE831 3 1
Paenibacillus sp. JDR-2 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rplU
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -90
score = 57.21
sequence = ACCATTGCTACAACC...

Gene: BSU27960: LSU ribosomal protein L21p
*
Bacillus amyloliquefaciens FZB42

Site:
position = -88
score = 56.8
sequence = ACCAATGCTACAACC...

Gene: RBAM_025010: LSU ribosomal protein L21p
*
Bacillus pumilus SAFR-032

Site:
position = -86
score = 55.84
sequence = ACCCGTGCTACAACC...

Gene: BPUM_2436: LSU ribosomal protein L21p
*
Bacillus licheniformis DSM 13

Site:
position = -88
score = 61.95
sequence = ACCCGTGCTACAACC...

Gene: BLi02923: LSU ribosomal protein L21p
*
Anoxybacillus flavithermus WK1

Site:
position = -41
score = 56.69
sequence = CCGTGCTACAACCGC...

Gene: Aflv_0694: LSU ribosomal protein L21p
*
Geobacillus kaustophilus HTA426

Site:
position = -95
score = 53.85
sequence = ACCCGCACTACAACC...

Gene: GK2610: LSU ribosomal protein L21p
*
Bacillus cereus ATCC 14579

Site:
position = -93
score = 58.1
sequence = CTATATGCTACAACC...

Gene: BC4438: LSU ribosomal protein L21p
*
Bacillus halodurans C-125

Site:
position = -86
score = 64.14
sequence = CCAATGACTACAACC...

Gene: BH3011: LSU ribosomal protein L21p
*
Bacillus clausii KSM-K16

Site:
position = -87
score = 51.9
sequence = AATGAACTTACAACC...

Gene: ABC2602: LSU ribosomal protein L21p
*
Oceanobacillus iheyensis HTE831

Site:
position = -137
score = 35.75
sequence = GCCCGTGCTACAACC...

Gene: OB2046: LSU ribosomal protein L21p
*
Paenibacillus sp. JDR-2

Site:
position = -97
score = 33.75
sequence = GGACATGCATGAACC...

Gene: Pjdr2_4413: LSU ribosomal protein L21p
LSU ribosomal protein L21p
ysxB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU27950: FIG139598: Potential ribosomal protein
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_025000: FIG139598: Potential ribosomal protein
 
Bacillus pumilus SAFR-032

Gene: BPUM_2435: FIG139598: Potential ribosomal protein
 
Bacillus licheniformis DSM 13

Gene: BLi02922: FIG139598: Potential ribosomal protein
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0695: FIG139598: Potential ribosomal protein
 
Geobacillus kaustophilus HTA426

Gene: GK2609: FIG139598: Potential ribosomal protein
 
Bacillus cereus ATCC 14579

Gene: BC4437: FIG139598: Potential ribosomal protein
 
Bacillus halodurans C-125

Gene: BH3010: FIG139598: Potential ribosomal protein
 
Bacillus clausii KSM-K16

Gene: ABC2601: FIG139598: Potential ribosomal protein
 
Oceanobacillus iheyensis HTE831

Gene: OB2045: FIG139598: Potential ribosomal protein
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4412: FIG139598: Potential ribosomal protein
FIG139598: Potential ribosomal protein
rpmA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU27940: LSU ribosomal protein L27p
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_024990: LSU ribosomal protein L27p
 
Bacillus pumilus SAFR-032

Gene: BPUM_2434: LSU ribosomal protein L27p
 
Bacillus licheniformis DSM 13

Gene: BLi02921: LSU ribosomal protein L27p
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0696: LSU ribosomal protein L27p
 
Geobacillus kaustophilus HTA426

Gene: GK2608: LSU ribosomal protein L27p
 
Bacillus cereus ATCC 14579

Gene: BC4436: LSU ribosomal protein L27p
 
Bacillus halodurans C-125

Gene: BH3009: LSU ribosomal protein L27p
 
Bacillus clausii KSM-K16

Gene: ABC2600: LSU ribosomal protein L27p
 
Oceanobacillus iheyensis HTE831

Gene: OB2044: LSU ribosomal protein L27p
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4411: LSU ribosomal protein L27p
LSU ribosomal protein L27p
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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